Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17635 and SGL_RS17640 overlap by 4 nucleotides SGL_RS17640 and SGL_RS17645 are separated by 2 nucleotides
SGL_RS17635: SGL_RS17635 - ABC transporter ATP-binding protein, at 3,410,761 to 3,411,852
_RS17635
SGL_RS17640: SGL_RS17640 - family 10 glycosylhydrolase, at 3,411,849 to 3,413,075
_RS17640
SGL_RS17645: SGL_RS17645 - glycoside hydrolase family 57 protein, at 3,413,078 to 3,414,667
_RS17645
Position (kb)
3411
3412
3413
3414 Strain fitness (log2 ratio)
-2
-1
0
1 at 3410.980 kb on + strand, within SGL_RS17635 at 3411.008 kb on + strand, within SGL_RS17635 at 3411.118 kb on - strand, within SGL_RS17635 at 3411.187 kb on + strand, within SGL_RS17635 at 3411.207 kb on - strand, within SGL_RS17635 at 3411.295 kb on + strand, within SGL_RS17635 at 3411.295 kb on + strand, within SGL_RS17635 at 3411.339 kb on - strand, within SGL_RS17635 at 3411.408 kb on - strand, within SGL_RS17635 at 3411.410 kb on - strand, within SGL_RS17635 at 3411.536 kb on + strand, within SGL_RS17635 at 3411.560 kb on + strand, within SGL_RS17635 at 3411.766 kb on - strand at 3412.188 kb on - strand, within SGL_RS17640 at 3412.463 kb on - strand, within SGL_RS17640 at 3412.653 kb on - strand, within SGL_RS17640 at 3412.817 kb on - strand, within SGL_RS17640 at 3412.913 kb on + strand, within SGL_RS17640 at 3412.967 kb on - strand at 3413.054 kb on + strand at 3413.239 kb on + strand, within SGL_RS17645 at 3413.242 kb on - strand, within SGL_RS17645 at 3413.284 kb on - strand, within SGL_RS17645 at 3413.414 kb on - strand, within SGL_RS17645 at 3413.444 kb on + strand, within SGL_RS17645 at 3413.448 kb on + strand, within SGL_RS17645 at 3413.518 kb on + strand, within SGL_RS17645 at 3413.538 kb on + strand, within SGL_RS17645 at 3413.676 kb on - strand, within SGL_RS17645 at 3413.709 kb on - strand, within SGL_RS17645 at 3413.916 kb on + strand, within SGL_RS17645 at 3414.052 kb on - strand, within SGL_RS17645 at 3414.075 kb on + strand, within SGL_RS17645
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 3,410,980 + SGL_RS17635 0.20 -0.2 3,411,008 + SGL_RS17635 0.23 -0.0 3,411,118 - SGL_RS17635 0.33 +0.5 3,411,187 + SGL_RS17635 0.39 -0.4 3,411,207 - SGL_RS17635 0.41 -0.1 3,411,295 + SGL_RS17635 0.49 -0.0 3,411,295 + SGL_RS17635 0.49 -0.1 3,411,339 - SGL_RS17635 0.53 -0.4 3,411,408 - SGL_RS17635 0.59 +0.5 3,411,410 - SGL_RS17635 0.59 -0.4 3,411,536 + SGL_RS17635 0.71 +0.1 3,411,560 + SGL_RS17635 0.73 -0.3 3,411,766 - +0.4 3,412,188 - SGL_RS17640 0.28 -0.0 3,412,463 - SGL_RS17640 0.50 +0.3 3,412,653 - SGL_RS17640 0.66 +0.1 3,412,817 - SGL_RS17640 0.79 +0.2 3,412,913 + SGL_RS17640 0.87 +1.7 3,412,967 - +0.7 3,413,054 + +0.5 3,413,239 + SGL_RS17645 0.10 -1.9 3,413,242 - SGL_RS17645 0.10 +0.2 3,413,284 - SGL_RS17645 0.13 +0.0 3,413,414 - SGL_RS17645 0.21 +0.3 3,413,444 + SGL_RS17645 0.23 +0.2 3,413,448 + SGL_RS17645 0.23 +0.4 3,413,518 + SGL_RS17645 0.28 -0.6 3,413,538 + SGL_RS17645 0.29 -0.1 3,413,676 - SGL_RS17645 0.38 +0.2 3,413,709 - SGL_RS17645 0.40 +0.2 3,413,916 + SGL_RS17645 0.53 -0.4 3,414,052 - SGL_RS17645 0.61 -0.6 3,414,075 + SGL_RS17645 0.63 -1.4
Or see this region's nucleotide sequence