Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17120 and SGL_RS17125 are separated by 329 nucleotides SGL_RS17125 and SGL_RS17130 are separated by 75 nucleotides SGL_RS17130 and SGL_RS17135 are separated by 64 nucleotides
SGL_RS17120: SGL_RS17120 - response regulator transcription factor, at 3,294,498 to 3,295,250
_RS17120
SGL_RS17125: SGL_RS17125 - inositol monophosphatase family protein, at 3,295,580 to 3,296,386
_RS17125
SGL_RS17130: SGL_RS17130 - hypothetical protein, at 3,296,462 to 3,297,247
_RS17130
SGL_RS17135: SGL_RS17135 - Crp/Fnr family transcriptional regulator, at 3,297,312 to 3,298,097
_RS17135
Position (kb)
3295
3296
3297 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3294.607 kb on + strand, within SGL_RS17120 at 3294.607 kb on + strand, within SGL_RS17120 at 3294.607 kb on + strand, within SGL_RS17120 at 3294.611 kb on + strand, within SGL_RS17120 at 3294.703 kb on + strand, within SGL_RS17120 at 3294.706 kb on - strand, within SGL_RS17120 at 3294.717 kb on + strand, within SGL_RS17120 at 3294.764 kb on + strand, within SGL_RS17120 at 3294.967 kb on + strand, within SGL_RS17120 at 3294.967 kb on + strand, within SGL_RS17120 at 3294.987 kb on + strand, within SGL_RS17120 at 3295.058 kb on + strand, within SGL_RS17120 at 3295.155 kb on + strand, within SGL_RS17120 at 3295.176 kb on + strand at 3295.184 kb on - strand at 3295.199 kb on - strand at 3295.247 kb on - strand at 3295.502 kb on + strand at 3295.636 kb on + strand at 3295.758 kb on - strand, within SGL_RS17125 at 3295.932 kb on + strand, within SGL_RS17125 at 3296.128 kb on + strand, within SGL_RS17125 at 3296.148 kb on + strand, within SGL_RS17125 at 3296.201 kb on - strand, within SGL_RS17125 at 3296.315 kb on + strand at 3296.365 kb on - strand at 3296.408 kb on - strand at 3296.552 kb on + strand, within SGL_RS17130 at 3296.590 kb on + strand, within SGL_RS17130 at 3296.599 kb on + strand, within SGL_RS17130 at 3296.670 kb on - strand, within SGL_RS17130 at 3296.779 kb on - strand, within SGL_RS17130 at 3296.799 kb on + strand, within SGL_RS17130 at 3296.836 kb on - strand, within SGL_RS17130 at 3296.892 kb on - strand, within SGL_RS17130 at 3296.893 kb on - strand, within SGL_RS17130 at 3296.920 kb on - strand, within SGL_RS17130 at 3297.073 kb on - strand, within SGL_RS17130 at 3297.074 kb on - strand, within SGL_RS17130 at 3297.133 kb on - strand, within SGL_RS17130 at 3297.180 kb on - strand at 3297.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 3,294,607 + SGL_RS17120 0.14 -0.6 3,294,607 + SGL_RS17120 0.14 +0.4 3,294,607 + SGL_RS17120 0.14 -0.7 3,294,611 + SGL_RS17120 0.15 -0.6 3,294,703 + SGL_RS17120 0.27 -0.6 3,294,706 - SGL_RS17120 0.28 -0.8 3,294,717 + SGL_RS17120 0.29 -0.8 3,294,764 + SGL_RS17120 0.35 -0.3 3,294,967 + SGL_RS17120 0.62 -0.5 3,294,967 + SGL_RS17120 0.62 -0.3 3,294,987 + SGL_RS17120 0.65 -0.3 3,295,058 + SGL_RS17120 0.74 -0.3 3,295,155 + SGL_RS17120 0.87 -0.6 3,295,176 + -0.9 3,295,184 - +0.0 3,295,199 - -0.6 3,295,247 - -0.5 3,295,502 + -0.5 3,295,636 + -5.0 3,295,758 - SGL_RS17125 0.22 -4.8 3,295,932 + SGL_RS17125 0.44 -4.7 3,296,128 + SGL_RS17125 0.68 -4.8 3,296,148 + SGL_RS17125 0.70 -4.6 3,296,201 - SGL_RS17125 0.77 -4.2 3,296,315 + -3.2 3,296,365 - -4.8 3,296,408 - -3.6 3,296,552 + SGL_RS17130 0.11 -2.4 3,296,590 + SGL_RS17130 0.16 -2.5 3,296,599 + SGL_RS17130 0.17 -4.0 3,296,670 - SGL_RS17130 0.26 -4.3 3,296,779 - SGL_RS17130 0.40 -3.0 3,296,799 + SGL_RS17130 0.43 -3.2 3,296,836 - SGL_RS17130 0.48 -4.5 3,296,892 - SGL_RS17130 0.55 -2.5 3,296,893 - SGL_RS17130 0.55 -2.8 3,296,920 - SGL_RS17130 0.58 -3.3 3,297,073 - SGL_RS17130 0.78 -1.2 3,297,074 - SGL_RS17130 0.78 -4.6 3,297,133 - SGL_RS17130 0.85 -2.4 3,297,180 - -2.5 3,297,336 - -2.8
Or see this region's nucleotide sequence