Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16945 and SGL_RS16950 are separated by 21 nucleotides SGL_RS16950 and SGL_RS16955 are separated by 249 nucleotides
SGL_RS16945: SGL_RS16945 - DUF3854 domain-containing protein, at 3,254,599 to 3,257,670
_RS16945
SGL_RS16950: SGL_RS16950 - phosphoketolase, at 3,257,692 to 3,259,887
_RS16950
SGL_RS16955: SGL_RS16955 - site-2 protease family protein, at 3,260,137 to 3,261,276
_RS16955
Position (kb)
3257
3258
3259
3260 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3256.730 kb on - strand, within SGL_RS16945 at 3256.928 kb on - strand, within SGL_RS16945 at 3256.932 kb on + strand, within SGL_RS16945 at 3256.973 kb on - strand, within SGL_RS16945 at 3257.015 kb on + strand, within SGL_RS16945 at 3257.167 kb on + strand, within SGL_RS16945 at 3257.410 kb on - strand at 3257.613 kb on + strand at 3257.649 kb on + strand at 3257.824 kb on + strand at 3258.000 kb on + strand, within SGL_RS16950 at 3258.248 kb on - strand, within SGL_RS16950 at 3258.343 kb on + strand, within SGL_RS16950 at 3258.361 kb on + strand, within SGL_RS16950 at 3258.386 kb on - strand, within SGL_RS16950 at 3258.401 kb on - strand, within SGL_RS16950 at 3258.423 kb on + strand, within SGL_RS16950 at 3258.522 kb on - strand, within SGL_RS16950 at 3258.522 kb on - strand, within SGL_RS16950 at 3258.552 kb on - strand, within SGL_RS16950 at 3258.625 kb on - strand, within SGL_RS16950 at 3258.940 kb on - strand, within SGL_RS16950 at 3259.198 kb on + strand, within SGL_RS16950 at 3259.470 kb on + strand, within SGL_RS16950 at 3259.639 kb on - strand, within SGL_RS16950 at 3259.772 kb on + strand at 3259.876 kb on + strand at 3260.042 kb on - strand at 3260.042 kb on - strand at 3260.055 kb on - strand at 3260.167 kb on - strand at 3260.357 kb on + strand, within SGL_RS16955 at 3260.487 kb on + strand, within SGL_RS16955 at 3260.623 kb on - strand, within SGL_RS16955 at 3260.747 kb on - strand, within SGL_RS16955 at 3260.754 kb on + strand, within SGL_RS16955 at 3260.772 kb on - strand, within SGL_RS16955 at 3260.794 kb on - strand, within SGL_RS16955
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 3,256,730 - SGL_RS16945 0.69 +0.3 3,256,928 - SGL_RS16945 0.76 -1.0 3,256,932 + SGL_RS16945 0.76 -0.1 3,256,973 - SGL_RS16945 0.77 +0.1 3,257,015 + SGL_RS16945 0.79 +0.2 3,257,167 + SGL_RS16945 0.84 +0.3 3,257,410 - -0.1 3,257,613 + -0.1 3,257,649 + +0.1 3,257,824 + -4.3 3,258,000 + SGL_RS16950 0.14 -3.1 3,258,248 - SGL_RS16950 0.25 -2.4 3,258,343 + SGL_RS16950 0.30 -3.4 3,258,361 + SGL_RS16950 0.30 -4.2 3,258,386 - SGL_RS16950 0.32 -3.3 3,258,401 - SGL_RS16950 0.32 -3.0 3,258,423 + SGL_RS16950 0.33 -5.1 3,258,522 - SGL_RS16950 0.38 -1.9 3,258,522 - SGL_RS16950 0.38 -4.4 3,258,552 - SGL_RS16950 0.39 -4.1 3,258,625 - SGL_RS16950 0.42 -3.0 3,258,940 - SGL_RS16950 0.57 -4.4 3,259,198 + SGL_RS16950 0.69 -1.9 3,259,470 + SGL_RS16950 0.81 -4.4 3,259,639 - SGL_RS16950 0.89 -5.3 3,259,772 + -1.6 3,259,876 + -2.4 3,260,042 - -0.3 3,260,042 - +0.2 3,260,055 - +0.1 3,260,167 - -0.2 3,260,357 + SGL_RS16955 0.19 +0.0 3,260,487 + SGL_RS16955 0.31 -0.2 3,260,623 - SGL_RS16955 0.43 +0.3 3,260,747 - SGL_RS16955 0.54 +0.1 3,260,754 + SGL_RS16955 0.54 +0.3 3,260,772 - SGL_RS16955 0.56 -0.1 3,260,794 - SGL_RS16955 0.58 +0.2
Or see this region's nucleotide sequence