Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13510

Experiment: Nickel (II) sulfate 3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13500 and SGL_RS13505 are separated by 100 nucleotidesSGL_RS13505 and SGL_RS13510 are separated by 65 nucleotidesSGL_RS13510 and SGL_RS13515 are separated by 226 nucleotidesSGL_RS13515 and SGL_RS13520 are separated by 225 nucleotides SGL_RS13500: SGL_RS13500 - ATP-dependent DNA helicase RecG, at 2,497,726 to 2,500,221 _RS13500 SGL_RS13505: SGL_RS13505 - signal peptide peptidase SppA, at 2,500,322 to 2,501,155 _RS13505 SGL_RS13510: SGL_RS13510 - transglycosylase domain-containing protein, at 2,501,221 to 2,503,878 _RS13510 SGL_RS13515: SGL_RS13515 - tRNA-Ser, at 2,504,105 to 2,504,189 _RS13515 SGL_RS13520: SGL_RS13520 - glutamine-hydrolyzing GMP synthase, at 2,504,415 to 2,506,043 _RS13520 Position (kb) 2501 2502 2503 2504Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2500.417 kb on - strand, within SGL_RS13505at 2500.462 kb on - strand, within SGL_RS13505at 2500.487 kb on + strand, within SGL_RS13505at 2500.495 kb on - strand, within SGL_RS13505at 2500.580 kb on + strand, within SGL_RS13505at 2500.813 kb on + strand, within SGL_RS13505at 2500.997 kb on - strand, within SGL_RS13505at 2501.012 kb on - strand, within SGL_RS13505at 2501.014 kb on + strand, within SGL_RS13505at 2501.127 kb on + strandat 2501.201 kb on - strandat 2501.251 kb on + strandat 2501.318 kb on + strandat 2501.437 kb on - strandat 2501.466 kb on - strandat 2501.554 kb on - strand, within SGL_RS13510at 2501.958 kb on - strand, within SGL_RS13510at 2502.196 kb on - strand, within SGL_RS13510at 2502.197 kb on - strand, within SGL_RS13510at 2502.290 kb on + strand, within SGL_RS13510at 2502.426 kb on - strand, within SGL_RS13510at 2502.500 kb on - strand, within SGL_RS13510at 2502.655 kb on + strand, within SGL_RS13510at 2502.753 kb on + strand, within SGL_RS13510at 2502.768 kb on - strand, within SGL_RS13510at 2502.804 kb on + strand, within SGL_RS13510at 2502.879 kb on - strand, within SGL_RS13510at 2503.013 kb on + strand, within SGL_RS13510at 2503.221 kb on - strand, within SGL_RS13510at 2503.466 kb on + strand, within SGL_RS13510at 2503.488 kb on - strand, within SGL_RS13510at 2503.586 kb on + strand, within SGL_RS13510at 2503.752 kb on - strandat 2504.042 kb on + strandat 2504.249 kb on - strandat 2504.259 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM
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2,500,417 - SGL_RS13505 0.11 -0.6
2,500,462 - SGL_RS13505 0.17 -0.3
2,500,487 + SGL_RS13505 0.20 -0.8
2,500,495 - SGL_RS13505 0.21 -0.1
2,500,580 + SGL_RS13505 0.31 -0.8
2,500,813 + SGL_RS13505 0.59 -0.7
2,500,997 - SGL_RS13505 0.81 -0.4
2,501,012 - SGL_RS13505 0.83 -0.1
2,501,014 + SGL_RS13505 0.83 -0.1
2,501,127 + -0.6
2,501,201 - +0.1
2,501,251 + +0.6
2,501,318 + -4.3
2,501,437 - -5.0
2,501,466 - -6.8
2,501,554 - SGL_RS13510 0.13 -5.0
2,501,958 - SGL_RS13510 0.28 -3.8
2,502,196 - SGL_RS13510 0.37 -4.2
2,502,197 - SGL_RS13510 0.37 -1.8
2,502,290 + SGL_RS13510 0.40 -1.8
2,502,426 - SGL_RS13510 0.45 -3.9
2,502,500 - SGL_RS13510 0.48 -4.5
2,502,655 + SGL_RS13510 0.54 -4.8
2,502,753 + SGL_RS13510 0.58 -2.7
2,502,768 - SGL_RS13510 0.58 -4.6
2,502,804 + SGL_RS13510 0.60 -3.2
2,502,879 - SGL_RS13510 0.62 -2.5
2,503,013 + SGL_RS13510 0.67 -5.0
2,503,221 - SGL_RS13510 0.75 -3.1
2,503,466 + SGL_RS13510 0.84 -3.8
2,503,488 - SGL_RS13510 0.85 -3.0
2,503,586 + SGL_RS13510 0.89 -4.8
2,503,752 - -3.2
2,504,042 + -4.2
2,504,249 - -1.6
2,504,259 - -1.7

Or see this region's nucleotide sequence