Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13170 and SGL_RS13175 are separated by 145 nucleotides SGL_RS13175 and SGL_RS13180 are separated by 200 nucleotides SGL_RS13180 and SGL_RS13185 are separated by 21 nucleotides
SGL_RS13170: SGL_RS13170 - histidine kinase, at 2,421,536 to 2,422,687
_RS13170
SGL_RS13175: SGL_RS13175 - GerMN domain-containing protein, at 2,422,833 to 2,423,420
_RS13175
SGL_RS13180: SGL_RS13180 - triose-phosphate isomerase, at 2,423,621 to 2,424,349
_RS13180
SGL_RS13185: SGL_RS13185 - AI-2E family transporter, at 2,424,371 to 2,425,390
_RS13185
Position (kb)
2422
2423
2424 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2
3
4 at 2422.181 kb on - strand, within SGL_RS13170 at 2422.183 kb on - strand, within SGL_RS13170 at 2422.207 kb on - strand, within SGL_RS13170 at 2422.231 kb on + strand, within SGL_RS13170 at 2422.609 kb on - strand at 2422.727 kb on + strand at 2422.762 kb on + strand at 2422.804 kb on - strand at 2422.917 kb on + strand, within SGL_RS13175 at 2423.019 kb on + strand, within SGL_RS13175 at 2423.048 kb on + strand, within SGL_RS13175 at 2423.090 kb on - strand, within SGL_RS13175 at 2423.326 kb on - strand, within SGL_RS13175 at 2423.381 kb on - strand at 2423.562 kb on - strand at 2424.098 kb on - strand, within SGL_RS13180 at 2424.375 kb on + strand at 2424.392 kb on + strand at 2424.392 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 2,422,181 - SGL_RS13170 0.56 +4.1 2,422,183 - SGL_RS13170 0.56 +4.0 2,422,207 - SGL_RS13170 0.58 +3.8 2,422,231 + SGL_RS13170 0.60 +4.4 2,422,609 - +4.5 2,422,727 + +3.9 2,422,762 + +4.5 2,422,804 - +3.8 2,422,917 + SGL_RS13175 0.14 -3.4 2,423,019 + SGL_RS13175 0.32 -4.5 2,423,048 + SGL_RS13175 0.37 -7.4 2,423,090 - SGL_RS13175 0.44 -5.2 2,423,326 - SGL_RS13175 0.84 -6.7 2,423,381 - -5.9 2,423,562 - +0.6 2,424,098 - SGL_RS13180 0.65 +0.5 2,424,375 + +2.0 2,424,392 + +1.4 2,424,392 + +1.4
Or see this region's nucleotide sequence