Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12560

Experiment: Nickel (II) sulfate 3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12555 and SGL_RS12560 overlap by 8 nucleotidesSGL_RS12560 and SGL_RS12565 are separated by 47 nucleotidesSGL_RS12565 and SGL_RS12570 are separated by 90 nucleotides SGL_RS12555: SGL_RS12555 - alpha-mannosidase, at 2,274,868 to 2,277,996 _RS12555 SGL_RS12560: SGL_RS12560 - ABC transporter permease, at 2,277,989 to 2,278,873 _RS12560 SGL_RS12565: SGL_RS12565 - MEKHLA domain-containing protein, at 2,278,921 to 2,279,406 _RS12565 SGL_RS12570: SGL_RS12570 - pentapeptide repeat-containing protein, at 2,279,497 to 2,280,006 _RS12570 Position (kb) 2277 2278 2279Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2 3 4at 2277.200 kb on + strand, within SGL_RS12555at 2277.208 kb on - strand, within SGL_RS12555at 2278.254 kb on + strand, within SGL_RS12560at 2278.267 kb on + strand, within SGL_RS12560at 2278.310 kb on - strand, within SGL_RS12560at 2278.372 kb on + strand, within SGL_RS12560at 2278.382 kb on - strand, within SGL_RS12560at 2278.734 kb on + strand, within SGL_RS12560at 2278.996 kb on - strand, within SGL_RS12565at 2279.287 kb on + strand, within SGL_RS12565at 2279.872 kb on + strand, within SGL_RS12570

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM
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2,277,200 + SGL_RS12555 0.75 +4.0
2,277,208 - SGL_RS12555 0.75 +3.1
2,278,254 + SGL_RS12560 0.30 -4.9
2,278,267 + SGL_RS12560 0.31 -7.1
2,278,310 - SGL_RS12560 0.36 -5.9
2,278,372 + SGL_RS12560 0.43 -4.3
2,278,382 - SGL_RS12560 0.44 -6.9
2,278,734 + SGL_RS12560 0.84 -5.9
2,278,996 - SGL_RS12565 0.15 -0.2
2,279,287 + SGL_RS12565 0.75 +0.2
2,279,872 + SGL_RS12570 0.74 +0.1

Or see this region's nucleotide sequence