Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11420 and SGL_RS11425 are separated by 206 nucleotides SGL_RS11425 and SGL_RS11430 are separated by 113 nucleotides SGL_RS11430 and SGL_RS11435 are separated by 72 nucleotides SGL_RS11435 and SGL_RS11440 are separated by 12 nucleotides
SGL_RS11420: SGL_RS11420 - class 1 fructose-bisphosphatase, at 2,022,028 to 2,023,071
_RS11420
SGL_RS11425: SGL_RS11425 - sucrose-phosphate phosphatase, at 2,023,278 to 2,024,012
_RS11425
SGL_RS11430: SGL_RS11430 - STAS domain-containing protein, at 2,024,126 to 2,024,476
_RS11430
SGL_RS11435: SGL_RS11435 - Mini-ribonuclease 3, at 2,024,549 to 2,024,980
_RS11435
SGL_RS11440: SGL_RS11440 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 2,024,993 to 2,026,147
_RS11440
Position (kb)
2023
2024
2025 Strain fitness (log2 ratio)
-1
0
1 at 2022.486 kb on - strand, within SGL_RS11420 at 2022.593 kb on + strand, within SGL_RS11420 at 2022.608 kb on + strand, within SGL_RS11420 at 2022.719 kb on + strand, within SGL_RS11420 at 2022.770 kb on - strand, within SGL_RS11420 at 2022.772 kb on + strand, within SGL_RS11420 at 2022.792 kb on + strand, within SGL_RS11420 at 2022.793 kb on - strand, within SGL_RS11420 at 2022.895 kb on - strand, within SGL_RS11420 at 2022.926 kb on - strand, within SGL_RS11420 at 2022.929 kb on + strand, within SGL_RS11420 at 2023.193 kb on + strand at 2023.193 kb on + strand at 2023.307 kb on + strand at 2023.308 kb on + strand at 2023.318 kb on + strand at 2023.439 kb on + strand, within SGL_RS11425 at 2023.443 kb on + strand, within SGL_RS11425 at 2023.465 kb on + strand, within SGL_RS11425 at 2023.509 kb on + strand, within SGL_RS11425 at 2023.874 kb on + strand, within SGL_RS11425 at 2023.915 kb on + strand, within SGL_RS11425 at 2024.555 kb on - strand at 2024.617 kb on + strand, within SGL_RS11435 at 2024.620 kb on - strand, within SGL_RS11435 at 2024.643 kb on + strand, within SGL_RS11435 at 2024.866 kb on - strand, within SGL_RS11435 at 2024.874 kb on - strand, within SGL_RS11435 at 2024.939 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 2,022,486 - SGL_RS11420 0.44 -0.2 2,022,593 + SGL_RS11420 0.54 +0.1 2,022,608 + SGL_RS11420 0.56 -0.1 2,022,719 + SGL_RS11420 0.66 -1.3 2,022,770 - SGL_RS11420 0.71 -0.4 2,022,772 + SGL_RS11420 0.71 +0.5 2,022,792 + SGL_RS11420 0.73 -0.0 2,022,793 - SGL_RS11420 0.73 -0.4 2,022,895 - SGL_RS11420 0.83 +0.5 2,022,926 - SGL_RS11420 0.86 -1.7 2,022,929 + SGL_RS11420 0.86 -0.5 2,023,193 + -0.8 2,023,193 + +0.0 2,023,307 + -0.3 2,023,308 + +0.2 2,023,318 + +0.2 2,023,439 + SGL_RS11425 0.22 +0.5 2,023,443 + SGL_RS11425 0.22 +0.0 2,023,465 + SGL_RS11425 0.25 +0.1 2,023,509 + SGL_RS11425 0.31 +0.2 2,023,874 + SGL_RS11425 0.81 -0.0 2,023,915 + SGL_RS11425 0.87 +0.9 2,024,555 - +1.2 2,024,617 + SGL_RS11435 0.16 +0.8 2,024,620 - SGL_RS11435 0.16 +1.4 2,024,643 + SGL_RS11435 0.22 +0.0 2,024,866 - SGL_RS11435 0.73 +1.3 2,024,874 - SGL_RS11435 0.75 +1.2 2,024,939 + +0.3
Or see this region's nucleotide sequence