Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10880 and SGL_RS10885 are separated by 182 nucleotides SGL_RS10885 and SGL_RS10890 are separated by 38 nucleotides SGL_RS10890 and SGL_RS10895 are separated by 403 nucleotides
SGL_RS10880: SGL_RS10880 - hydrogenase nickel incorporation protein HypB, at 1,907,764 to 1,908,621
_RS10880
SGL_RS10885: SGL_RS10885 - hypothetical protein, at 1,908,804 to 1,909,151
_RS10885
SGL_RS10890: SGL_RS10890 - LD-carboxypeptidase, at 1,909,190 to 1,910,095
_RS10890
SGL_RS10895: SGL_RS10895 - pentapeptide repeat-containing protein, at 1,910,499 to 1,911,494
_RS10895
Position (kb)
1909
1910
1911 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1908.193 kb on - strand, within SGL_RS10880 at 1908.324 kb on - strand, within SGL_RS10880 at 1908.330 kb on + strand, within SGL_RS10880 at 1908.363 kb on - strand, within SGL_RS10880 at 1908.469 kb on + strand, within SGL_RS10880 at 1908.531 kb on + strand, within SGL_RS10880 at 1908.539 kb on - strand at 1908.674 kb on - strand at 1909.266 kb on + strand at 1909.419 kb on + strand, within SGL_RS10890 at 1909.574 kb on + strand, within SGL_RS10890 at 1909.593 kb on + strand, within SGL_RS10890 at 1909.593 kb on + strand, within SGL_RS10890 at 1909.601 kb on - strand, within SGL_RS10890 at 1909.601 kb on - strand, within SGL_RS10890 at 1909.605 kb on - strand, within SGL_RS10890 at 1909.615 kb on - strand, within SGL_RS10890 at 1909.711 kb on - strand, within SGL_RS10890 at 1909.892 kb on + strand, within SGL_RS10890 at 1909.901 kb on - strand, within SGL_RS10890 at 1910.008 kb on - strand at 1910.014 kb on - strand at 1910.062 kb on - strand at 1910.088 kb on - strand at 1910.497 kb on - strand at 1910.619 kb on + strand, within SGL_RS10895 at 1910.636 kb on - strand, within SGL_RS10895 at 1910.659 kb on + strand, within SGL_RS10895 at 1910.784 kb on + strand, within SGL_RS10895 at 1910.822 kb on - strand, within SGL_RS10895 at 1910.884 kb on + strand, within SGL_RS10895 at 1910.897 kb on - strand, within SGL_RS10895 at 1910.912 kb on - strand, within SGL_RS10895 at 1910.912 kb on - strand, within SGL_RS10895 at 1910.912 kb on - strand, within SGL_RS10895 at 1910.912 kb on - strand, within SGL_RS10895 at 1910.913 kb on - strand, within SGL_RS10895 at 1910.937 kb on - strand, within SGL_RS10895 at 1911.064 kb on + strand, within SGL_RS10895 at 1911.071 kb on + strand, within SGL_RS10895 at 1911.072 kb on - strand, within SGL_RS10895
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 1,908,193 - SGL_RS10880 0.50 -1.2 1,908,324 - SGL_RS10880 0.65 -0.1 1,908,330 + SGL_RS10880 0.66 +0.5 1,908,363 - SGL_RS10880 0.70 -0.8 1,908,469 + SGL_RS10880 0.82 +0.1 1,908,531 + SGL_RS10880 0.89 -0.3 1,908,539 - +0.6 1,908,674 - +0.0 1,909,266 + -1.9 1,909,419 + SGL_RS10890 0.25 -2.9 1,909,574 + SGL_RS10890 0.42 -2.5 1,909,593 + SGL_RS10890 0.44 -3.5 1,909,593 + SGL_RS10890 0.44 -2.9 1,909,601 - SGL_RS10890 0.45 -4.1 1,909,601 - SGL_RS10890 0.45 -4.4 1,909,605 - SGL_RS10890 0.46 -4.4 1,909,615 - SGL_RS10890 0.47 -4.3 1,909,711 - SGL_RS10890 0.58 -4.2 1,909,892 + SGL_RS10890 0.77 -3.2 1,909,901 - SGL_RS10890 0.78 -3.3 1,910,008 - -4.1 1,910,014 - -3.0 1,910,062 - -2.9 1,910,088 - -3.5 1,910,497 - +0.6 1,910,619 + SGL_RS10895 0.12 -0.2 1,910,636 - SGL_RS10895 0.14 +0.7 1,910,659 + SGL_RS10895 0.16 -0.0 1,910,784 + SGL_RS10895 0.29 +0.2 1,910,822 - SGL_RS10895 0.32 +0.2 1,910,884 + SGL_RS10895 0.39 -0.4 1,910,897 - SGL_RS10895 0.40 +0.5 1,910,912 - SGL_RS10895 0.41 +0.3 1,910,912 - SGL_RS10895 0.41 +0.1 1,910,912 - SGL_RS10895 0.41 -0.2 1,910,912 - SGL_RS10895 0.41 -0.7 1,910,913 - SGL_RS10895 0.42 -0.3 1,910,937 - SGL_RS10895 0.44 +0.8 1,911,064 + SGL_RS10895 0.57 +0.0 1,911,071 + SGL_RS10895 0.57 -0.1 1,911,072 - SGL_RS10895 0.58 +0.1
Or see this region's nucleotide sequence