Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10610 and SGL_RS10615 are separated by 83 nucleotides SGL_RS10615 and SGL_RS10620 are separated by 59 nucleotides SGL_RS10620 and SGL_RS10625 are separated by 96 nucleotides
SGL_RS10610: SGL_RS10610 - mannose-1-phosphate guanylyltransferase, at 1,845,795 to 1,846,865
_RS10610
SGL_RS10615: SGL_RS10615 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 1,846,949 to 1,848,241
_RS10615
SGL_RS10620: SGL_RS10620 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 1,848,301 to 1,848,702
_RS10620
SGL_RS10625: SGL_RS10625 - HlyD family efflux transporter periplasmic adaptor subunit, at 1,848,799 to 1,850,550
_RS10625
Position (kb)
1846
1847
1848
1849 Strain fitness (log2 ratio)
-1
0
1 at 1846.963 kb on + strand at 1847.228 kb on - strand, within SGL_RS10615 at 1847.287 kb on + strand, within SGL_RS10615 at 1847.434 kb on - strand, within SGL_RS10615 at 1847.468 kb on + strand, within SGL_RS10615 at 1847.468 kb on + strand, within SGL_RS10615 at 1847.504 kb on - strand, within SGL_RS10615 at 1847.619 kb on + strand, within SGL_RS10615 at 1847.649 kb on - strand, within SGL_RS10615 at 1847.671 kb on - strand, within SGL_RS10615 at 1847.718 kb on + strand, within SGL_RS10615 at 1847.794 kb on - strand, within SGL_RS10615 at 1848.164 kb on + strand at 1848.198 kb on + strand at 1848.246 kb on - strand at 1848.298 kb on + strand at 1848.306 kb on - strand at 1848.339 kb on - strand at 1848.393 kb on - strand, within SGL_RS10620 at 1848.566 kb on + strand, within SGL_RS10620 at 1848.566 kb on + strand, within SGL_RS10620 at 1848.574 kb on - strand, within SGL_RS10620 at 1848.671 kb on + strand at 1848.861 kb on - strand at 1849.044 kb on - strand, within SGL_RS10625 at 1849.056 kb on - strand, within SGL_RS10625 at 1849.230 kb on + strand, within SGL_RS10625 at 1849.235 kb on + strand, within SGL_RS10625
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 1,846,963 + +1.7 1,847,228 - SGL_RS10615 0.22 +0.1 1,847,287 + SGL_RS10615 0.26 -0.4 1,847,434 - SGL_RS10615 0.38 +0.6 1,847,468 + SGL_RS10615 0.40 -0.3 1,847,468 + SGL_RS10615 0.40 +0.1 1,847,504 - SGL_RS10615 0.43 +0.8 1,847,619 + SGL_RS10615 0.52 +1.0 1,847,649 - SGL_RS10615 0.54 +0.7 1,847,671 - SGL_RS10615 0.56 +0.5 1,847,718 + SGL_RS10615 0.59 +0.1 1,847,794 - SGL_RS10615 0.65 +0.2 1,848,164 + +0.1 1,848,198 + +0.2 1,848,246 - +0.1 1,848,298 + -0.1 1,848,306 - -0.1 1,848,339 - +0.2 1,848,393 - SGL_RS10620 0.23 +0.2 1,848,566 + SGL_RS10620 0.66 +0.6 1,848,566 + SGL_RS10620 0.66 +0.5 1,848,574 - SGL_RS10620 0.68 +0.2 1,848,671 + +0.2 1,848,861 - -0.4 1,849,044 - SGL_RS10625 0.14 +0.2 1,849,056 - SGL_RS10625 0.15 -1.5 1,849,230 + SGL_RS10625 0.25 -0.2 1,849,235 + SGL_RS10625 0.25 -0.2
Or see this region's nucleotide sequence