Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10580 and SGL_RS10585 are separated by 564 nucleotides SGL_RS10585 and SGL_RS19605 are separated by 25 nucleotides SGL_RS19605 and SGL_RS10595 are separated by 126 nucleotides SGL_RS10595 and SGL_RS10600 are separated by 75 nucleotides
SGL_RS10580: SGL_RS10580 - bifunctional sterol desaturase/short chain dehydrogenase, at 1,839,259 to 1,840,491
_RS10580
SGL_RS10585: SGL_RS10585 - MFS transporter, at 1,841,056 to 1,842,690
_RS10585
SGL_RS19605: SGL_RS19605 - hypothetical protein, at 1,842,716 to 1,842,856
_RS19605
SGL_RS10595: SGL_RS10595 - hypothetical protein, at 1,842,983 to 1,843,534
_RS10595
SGL_RS10600: SGL_RS10600 - YybS family protein, at 1,843,610 to 1,844,437
_RS10600
Position (kb) 1841
1842
1843 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 1840.468 kb on - strand at 1840.779 kb on + strand at 1841.114 kb on + strand at 1841.198 kb on + strand at 1841.271 kb on + strand, within SGL_RS10585 at 1841.361 kb on - strand, within SGL_RS10585 at 1841.363 kb on + strand, within SGL_RS10585 at 1841.463 kb on - strand, within SGL_RS10585 at 1841.479 kb on + strand, within SGL_RS10585 at 1841.497 kb on - strand, within SGL_RS10585 at 1841.497 kb on - strand, within SGL_RS10585 at 1841.640 kb on + strand, within SGL_RS10585 at 1841.833 kb on + strand, within SGL_RS10585 at 1842.009 kb on + strand, within SGL_RS10585 at 1842.065 kb on + strand, within SGL_RS10585 at 1842.065 kb on + strand, within SGL_RS10585 at 1842.070 kb on + strand, within SGL_RS10585 at 1842.090 kb on - strand, within SGL_RS10585 at 1842.126 kb on + strand, within SGL_RS10585 at 1842.160 kb on + strand, within SGL_RS10585 at 1842.161 kb on + strand, within SGL_RS10585 at 1842.175 kb on + strand, within SGL_RS10585 at 1842.248 kb on - strand, within SGL_RS10585 at 1842.557 kb on - strand at 1842.783 kb on - strand, within SGL_RS19605 at 1842.783 kb on - strand, within SGL_RS19605 at 1842.889 kb on + strand at 1842.897 kb on - strand at 1842.932 kb on + strand at 1842.993 kb on + strand at 1842.993 kb on + strand at 1843.001 kb on - strand at 1843.190 kb on - strand, within SGL_RS10595
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 1,840,468 - -1.6 1,840,779 + -0.2 1,841,114 + -3.5 1,841,198 + -5.4 1,841,271 + SGL_RS10585 0.13 -4.6 1,841,361 - SGL_RS10585 0.19 -4.0 1,841,363 + SGL_RS10585 0.19 -5.8 1,841,463 - SGL_RS10585 0.25 -4.0 1,841,479 + SGL_RS10585 0.26 -4.9 1,841,497 - SGL_RS10585 0.27 -3.8 1,841,497 - SGL_RS10585 0.27 -5.9 1,841,640 + SGL_RS10585 0.36 -1.9 1,841,833 + SGL_RS10585 0.48 -5.9 1,842,009 + SGL_RS10585 0.58 -6.0 1,842,065 + SGL_RS10585 0.62 -4.0 1,842,065 + SGL_RS10585 0.62 -6.1 1,842,070 + SGL_RS10585 0.62 -6.1 1,842,090 - SGL_RS10585 0.63 -4.1 1,842,126 + SGL_RS10585 0.65 -4.4 1,842,160 + SGL_RS10585 0.68 -4.8 1,842,161 + SGL_RS10585 0.68 -3.7 1,842,175 + SGL_RS10585 0.68 -5.3 1,842,248 - SGL_RS10585 0.73 -5.2 1,842,557 - -4.8 1,842,783 - SGL_RS19605 0.48 -1.3 1,842,783 - SGL_RS19605 0.48 -1.2 1,842,889 + -1.0 1,842,897 - -0.1 1,842,932 + +0.4 1,842,993 + +0.1 1,842,993 + -0.2 1,843,001 - +0.3 1,843,190 - SGL_RS10595 0.38 +0.6
Or see this region's nucleotide sequence