Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08960 and SGL_RS19340 are separated by 58 nucleotides SGL_RS19340 and SGL_RS08965 are separated by 166 nucleotides SGL_RS08965 and SGL_RS08970 are separated by 509 nucleotides
SGL_RS08960: SGL_RS08960 - flavodoxin FldA, at 1,516,659 to 1,517,171
_RS08960
SGL_RS19340: SGL_RS19340 - hypothetical protein, at 1,517,230 to 1,517,409
_RS19340
SGL_RS08965: SGL_RS08965 - chlorophyll a/b binding light-harvesting protein, at 1,517,576 to 1,518,604
_RS08965
SGL_RS08970: SGL_RS08970 - ribosome biogenesis GTPase YlqF, at 1,519,114 to 1,519,953
_RS08970
Position (kb)
1517
1518
1519 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1517.234 kb on + strand at 1517.427 kb on - strand at 1517.828 kb on + strand, within SGL_RS08965 at 1517.895 kb on + strand, within SGL_RS08965 at 1517.921 kb on + strand, within SGL_RS08965 at 1517.921 kb on + strand, within SGL_RS08965 at 1518.093 kb on + strand, within SGL_RS08965 at 1518.112 kb on - strand, within SGL_RS08965 at 1518.237 kb on + strand, within SGL_RS08965 at 1518.301 kb on - strand, within SGL_RS08965 at 1518.324 kb on - strand, within SGL_RS08965 at 1518.342 kb on + strand, within SGL_RS08965 at 1518.380 kb on - strand, within SGL_RS08965 at 1518.384 kb on - strand, within SGL_RS08965 at 1518.426 kb on + strand, within SGL_RS08965 at 1518.426 kb on + strand, within SGL_RS08965 at 1518.434 kb on - strand, within SGL_RS08965 at 1518.434 kb on - strand, within SGL_RS08965 at 1518.434 kb on - strand, within SGL_RS08965 at 1518.466 kb on + strand, within SGL_RS08965 at 1518.474 kb on - strand, within SGL_RS08965 at 1518.528 kb on + strand at 1518.747 kb on - strand at 1518.889 kb on + strand at 1518.900 kb on + strand at 1518.908 kb on - strand at 1518.913 kb on - strand at 1519.049 kb on + strand at 1519.064 kb on - strand at 1519.087 kb on - strand at 1519.118 kb on - strand at 1519.118 kb on - strand at 1519.370 kb on - strand, within SGL_RS08970 at 1519.549 kb on + strand, within SGL_RS08970 at 1519.551 kb on + strand, within SGL_RS08970
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 1,517,234 + -0.9 1,517,427 - -3.1 1,517,828 + SGL_RS08965 0.24 +2.4 1,517,895 + SGL_RS08965 0.31 +2.4 1,517,921 + SGL_RS08965 0.34 +4.5 1,517,921 + SGL_RS08965 0.34 +1.8 1,518,093 + SGL_RS08965 0.50 +2.3 1,518,112 - SGL_RS08965 0.52 +1.9 1,518,237 + SGL_RS08965 0.64 +2.3 1,518,301 - SGL_RS08965 0.70 +1.9 1,518,324 - SGL_RS08965 0.73 +1.6 1,518,342 + SGL_RS08965 0.74 +2.4 1,518,380 - SGL_RS08965 0.78 +2.5 1,518,384 - SGL_RS08965 0.79 +2.5 1,518,426 + SGL_RS08965 0.83 +2.0 1,518,426 + SGL_RS08965 0.83 +2.0 1,518,434 - SGL_RS08965 0.83 +2.2 1,518,434 - SGL_RS08965 0.83 +2.5 1,518,434 - SGL_RS08965 0.83 +1.9 1,518,466 + SGL_RS08965 0.86 +2.2 1,518,474 - SGL_RS08965 0.87 +1.5 1,518,528 + +2.6 1,518,747 - +2.0 1,518,889 + +0.4 1,518,900 + +0.1 1,518,908 - -0.0 1,518,913 - +0.6 1,519,049 + -0.0 1,519,064 - -0.2 1,519,087 - +0.4 1,519,118 - -0.9 1,519,118 - -0.2 1,519,370 - SGL_RS08970 0.30 -2.2 1,519,549 + SGL_RS08970 0.52 -3.0 1,519,551 + SGL_RS08970 0.52 -2.4
Or see this region's nucleotide sequence