Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07940 and SGL_RS07945 are separated by 98 nucleotides SGL_RS07945 and SGL_RS07950 are separated by 143 nucleotides SGL_RS07950 and SGL_RS07955 are separated by 154 nucleotides SGL_RS07955 and SGL_RS07960 are separated by 3 nucleotides
SGL_RS07940: SGL_RS07940 - type II secretion system protein, at 1,296,382 to 1,296,894
_RS07940
SGL_RS07945: SGL_RS07945 - type IV pilin-like G/H family protein, at 1,296,993 to 1,297,499
_RS07945
SGL_RS07950: SGL_RS07950 - methyltransferase domain-containing protein, at 1,297,643 to 1,298,965
_RS07950
SGL_RS07955: SGL_RS07955 - hypothetical protein, at 1,299,120 to 1,299,725
_RS07955
SGL_RS07960: SGL_RS07960 - DUF29 domain-containing protein, at 1,299,729 to 1,300,166
_RS07960
Position (kb) 1297
1298
1299 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 1296.773 kb on + strand, within SGL_RS07940 at 1296.773 kb on + strand, within SGL_RS07940 at 1297.108 kb on - strand, within SGL_RS07945 at 1297.163 kb on - strand, within SGL_RS07945 at 1297.366 kb on + strand, within SGL_RS07945 at 1297.562 kb on - strand at 1297.654 kb on - strand at 1297.700 kb on - strand at 1297.702 kb on + strand at 1297.732 kb on + strand at 1297.740 kb on - strand at 1297.788 kb on + strand, within SGL_RS07950 at 1297.802 kb on - strand, within SGL_RS07950 at 1297.973 kb on - strand, within SGL_RS07950 at 1298.005 kb on - strand, within SGL_RS07950 at 1298.005 kb on - strand, within SGL_RS07950 at 1298.022 kb on + strand, within SGL_RS07950 at 1298.320 kb on + strand, within SGL_RS07950 at 1298.464 kb on + strand, within SGL_RS07950 at 1298.524 kb on + strand, within SGL_RS07950 at 1298.537 kb on + strand, within SGL_RS07950 at 1298.666 kb on + strand, within SGL_RS07950 at 1298.768 kb on + strand, within SGL_RS07950 at 1298.810 kb on - strand, within SGL_RS07950 at 1298.810 kb on - strand, within SGL_RS07950 at 1298.858 kb on + strand at 1298.973 kb on + strand at 1299.173 kb on - strand at 1299.318 kb on - strand, within SGL_RS07955 at 1299.351 kb on + strand, within SGL_RS07955 at 1299.383 kb on + strand, within SGL_RS07955 at 1299.909 kb on + strand, within SGL_RS07960
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 1,296,773 + SGL_RS07940 0.76 -0.4 1,296,773 + SGL_RS07940 0.76 +0.3 1,297,108 - SGL_RS07945 0.23 +4.9 1,297,163 - SGL_RS07945 0.34 +5.5 1,297,366 + SGL_RS07945 0.74 -1.8 1,297,562 - +3.3 1,297,654 - +0.5 1,297,700 - +0.5 1,297,702 + +0.3 1,297,732 + +0.5 1,297,740 - +0.6 1,297,788 + SGL_RS07950 0.11 -0.1 1,297,802 - SGL_RS07950 0.12 +0.6 1,297,973 - SGL_RS07950 0.25 +0.6 1,298,005 - SGL_RS07950 0.27 +0.5 1,298,005 - SGL_RS07950 0.27 -0.3 1,298,022 + SGL_RS07950 0.29 -1.6 1,298,320 + SGL_RS07950 0.51 -0.2 1,298,464 + SGL_RS07950 0.62 +0.1 1,298,524 + SGL_RS07950 0.67 +0.2 1,298,537 + SGL_RS07950 0.68 +0.6 1,298,666 + SGL_RS07950 0.77 +1.1 1,298,768 + SGL_RS07950 0.85 -0.6 1,298,810 - SGL_RS07950 0.88 +0.2 1,298,810 - SGL_RS07950 0.88 +0.4 1,298,858 + -0.5 1,298,973 + -0.9 1,299,173 - -1.2 1,299,318 - SGL_RS07955 0.33 -0.1 1,299,351 + SGL_RS07955 0.38 +1.1 1,299,383 + SGL_RS07955 0.43 +0.8 1,299,909 + SGL_RS07960 0.41 +0.2
Or see this region's nucleotide sequence