Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07250 and SGL_RS07260 are separated by 228 nucleotides SGL_RS07260 and SGL_RS07265 are separated by 20 nucleotides SGL_RS07265 and SGL_RS07270 are separated by 87 nucleotides SGL_RS07270 and SGL_RS07275 are separated by 76 nucleotides SGL_RS07275 and SGL_RS07280 are separated by 53 nucleotides
SGL_RS07250: SGL_RS07250 - aminotransferase class IV, at 1,153,292 to 1,154,101
_RS07250
SGL_RS07260: SGL_RS07260 - hypothetical protein, at 1,154,330 to 1,154,836
_RS07260
SGL_RS07265: SGL_RS07265 - AarF/ABC1/UbiB kinase family protein, at 1,154,857 to 1,156,083
_RS07265
SGL_RS07270: SGL_RS07270 - hypothetical protein, at 1,156,171 to 1,156,503
_RS07270
SGL_RS07275: SGL_RS07275 - clan AA aspartic protease, at 1,156,580 to 1,156,975
_RS07275
SGL_RS07280: SGL_RS07280 - excinuclease ABC subunit UvrC, at 1,157,029 to 1,158,909
_RS07280
Position (kb) 1154
1155
1156
1157 Strain fitness (log2 ratio) -1
0
1 at 1153.953 kb on - strand, within SGL_RS07250 at 1154.061 kb on - strand at 1154.306 kb on - strand at 1154.663 kb on - strand, within SGL_RS07260 at 1154.689 kb on - strand, within SGL_RS07260 at 1154.689 kb on - strand, within SGL_RS07260 at 1154.696 kb on + strand, within SGL_RS07260 at 1154.712 kb on + strand, within SGL_RS07260 at 1154.741 kb on + strand, within SGL_RS07260 at 1154.763 kb on - strand, within SGL_RS07260 at 1154.797 kb on - strand at 1154.803 kb on - strand at 1154.806 kb on - strand at 1154.820 kb on - strand at 1154.869 kb on + strand at 1154.898 kb on + strand at 1154.949 kb on - strand at 1155.126 kb on - strand, within SGL_RS07265 at 1155.136 kb on + strand, within SGL_RS07265 at 1155.190 kb on - strand, within SGL_RS07265 at 1155.595 kb on - strand, within SGL_RS07265 at 1155.779 kb on + strand, within SGL_RS07265 at 1156.304 kb on - strand, within SGL_RS07270
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 1,153,953 - SGL_RS07250 0.82 +0.4 1,154,061 - +0.9 1,154,306 - -1.0 1,154,663 - SGL_RS07260 0.66 +1.6 1,154,689 - SGL_RS07260 0.71 -0.2 1,154,689 - SGL_RS07260 0.71 +0.0 1,154,696 + SGL_RS07260 0.72 -0.4 1,154,712 + SGL_RS07260 0.75 +0.3 1,154,741 + SGL_RS07260 0.81 +0.5 1,154,763 - SGL_RS07260 0.85 +0.2 1,154,797 - +0.0 1,154,803 - -0.0 1,154,806 - +0.2 1,154,820 - -0.1 1,154,869 + +0.5 1,154,898 + -0.4 1,154,949 - -0.8 1,155,126 - SGL_RS07265 0.22 +0.4 1,155,136 + SGL_RS07265 0.23 +0.2 1,155,190 - SGL_RS07265 0.27 -0.6 1,155,595 - SGL_RS07265 0.60 +0.3 1,155,779 + SGL_RS07265 0.75 +0.1 1,156,304 - SGL_RS07270 0.40 +0.5
Or see this region's nucleotide sequence