Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06340

Experiment: Nickel (II) sulfate 3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06335 and SGL_RS06340 are separated by 653 nucleotidesSGL_RS06340 and SGL_RS06345 overlap by 4 nucleotides SGL_RS06335: SGL_RS06335 - glycosyltransferase family protein, at 951,797 to 953,098 _RS06335 SGL_RS06340: SGL_RS06340 - response regulator transcription factor, at 953,752 to 954,456 _RS06340 SGL_RS06345: SGL_RS06345 - alpha-ketoacid dehydrogenase subunit beta, at 954,453 to 955,427 _RS06345 Position (kb) 953 954 955Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 952.786 kb on - strand, within SGL_RS06335at 953.072 kb on + strandat 953.151 kb on + strandat 953.536 kb on + strandat 953.687 kb on - strandat 953.809 kb on + strandat 953.809 kb on + strandat 953.831 kb on - strand, within SGL_RS06340at 953.831 kb on - strand, within SGL_RS06340at 953.964 kb on - strand, within SGL_RS06340at 954.012 kb on - strand, within SGL_RS06340at 954.205 kb on + strand, within SGL_RS06340at 954.217 kb on + strand, within SGL_RS06340at 954.225 kb on - strand, within SGL_RS06340at 954.401 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM
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952,786 - SGL_RS06335 0.76 +0.2
953,072 + -0.1
953,151 + -0.1
953,536 + -0.6
953,687 - -0.4
953,809 + -5.4
953,809 + -2.0
953,831 - SGL_RS06340 0.11 -4.3
953,831 - SGL_RS06340 0.11 -4.5
953,964 - SGL_RS06340 0.30 -0.9
954,012 - SGL_RS06340 0.37 -5.0
954,205 + SGL_RS06340 0.64 -3.7
954,217 + SGL_RS06340 0.66 -6.6
954,225 - SGL_RS06340 0.67 -4.8
954,401 - -5.8

Or see this region's nucleotide sequence