Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05410

Experiment: Nickel (II) sulfate 3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05405 and SGL_RS05410 are separated by 48 nucleotidesSGL_RS05410 and SGL_RS05415 overlap by 50 nucleotides SGL_RS05405: SGL_RS05405 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 756,053 to 757,195 _RS05405 SGL_RS05410: SGL_RS05410 - type II secretion system protein, at 757,244 to 757,720 _RS05410 SGL_RS05415: SGL_RS05415 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 757,671 to 758,753 _RS05415 Position (kb) 757 758Strain fitness (log2 ratio) -1 0 1at 756.324 kb on + strand, within SGL_RS05405at 756.386 kb on - strand, within SGL_RS05405at 756.415 kb on - strand, within SGL_RS05405at 756.570 kb on - strand, within SGL_RS05405at 756.727 kb on - strand, within SGL_RS05405at 756.733 kb on + strand, within SGL_RS05405at 756.802 kb on + strand, within SGL_RS05405at 757.022 kb on + strand, within SGL_RS05405at 757.022 kb on + strand, within SGL_RS05405at 757.065 kb on - strand, within SGL_RS05405at 757.387 kb on - strand, within SGL_RS05410at 757.504 kb on - strand, within SGL_RS05410at 758.029 kb on + strand, within SGL_RS05415at 758.328 kb on - strand, within SGL_RS05415at 758.362 kb on + strand, within SGL_RS05415at 758.517 kb on + strand, within SGL_RS05415

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM
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756,324 + SGL_RS05405 0.24 -0.3
756,386 - SGL_RS05405 0.29 +1.2
756,415 - SGL_RS05405 0.32 -0.1
756,570 - SGL_RS05405 0.45 +0.6
756,727 - SGL_RS05405 0.59 +0.0
756,733 + SGL_RS05405 0.59 -0.2
756,802 + SGL_RS05405 0.66 -0.3
757,022 + SGL_RS05405 0.85 +0.5
757,022 + SGL_RS05405 0.85 +0.4
757,065 - SGL_RS05405 0.89 -1.0
757,387 - SGL_RS05410 0.30 +0.7
757,504 - SGL_RS05410 0.55 +0.8
758,029 + SGL_RS05415 0.33 +0.1
758,328 - SGL_RS05415 0.61 +0.4
758,362 + SGL_RS05415 0.64 -0.0
758,517 + SGL_RS05415 0.78 +0.7

Or see this region's nucleotide sequence