Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05205 and SGL_RS05210 are separated by 67 nucleotides SGL_RS05210 and SGL_RS05215 are separated by 190 nucleotides SGL_RS05215 and SGL_RS05220 are separated by 31 nucleotides
SGL_RS05205: SGL_RS05205 - DEAD/DEAH box helicase, at 716,309 to 719,665
_RS05205
SGL_RS05210: SGL_RS05210 - SLBB domain-containing protein, at 719,733 to 721,238
_RS05210
SGL_RS05215: SGL_RS05215 - TIGR02450 family Trp-rich protein, at 721,429 to 721,692
_RS05215
SGL_RS05220: SGL_RS05220 - DUF1995 family protein, at 721,724 to 722,479
_RS05220
Position (kb) 719
720
721
722 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 719.213 kb on - strand, within SGL_RS05205 at 719.767 kb on + strand at 719.769 kb on + strand at 719.975 kb on - strand, within SGL_RS05210 at 720.057 kb on - strand, within SGL_RS05210 at 720.303 kb on + strand, within SGL_RS05210 at 720.305 kb on + strand, within SGL_RS05210 at 720.411 kb on + strand, within SGL_RS05210 at 720.555 kb on - strand, within SGL_RS05210 at 720.832 kb on - strand, within SGL_RS05210 at 721.017 kb on - strand, within SGL_RS05210 at 721.037 kb on + strand, within SGL_RS05210 at 721.056 kb on - strand, within SGL_RS05210 at 721.112 kb on - strand at 721.166 kb on + strand at 721.166 kb on + strand at 721.201 kb on - strand at 721.329 kb on - strand at 721.471 kb on - strand, within SGL_RS05215 at 721.652 kb on - strand, within SGL_RS05215 at 721.722 kb on - strand at 721.751 kb on + strand at 721.945 kb on + strand, within SGL_RS05220
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 719,213 - SGL_RS05205 0.87 +0.0 719,767 + -3.3 719,769 + -4.1 719,975 - SGL_RS05210 0.16 -3.1 720,057 - SGL_RS05210 0.22 -2.9 720,303 + SGL_RS05210 0.38 -4.6 720,305 + SGL_RS05210 0.38 -3.3 720,411 + SGL_RS05210 0.45 -4.8 720,555 - SGL_RS05210 0.55 -5.1 720,832 - SGL_RS05210 0.73 -5.1 721,017 - SGL_RS05210 0.85 -1.8 721,037 + SGL_RS05210 0.87 -5.9 721,056 - SGL_RS05210 0.88 -4.4 721,112 - -3.3 721,166 + -5.4 721,166 + -5.0 721,201 - -3.8 721,329 - +0.1 721,471 - SGL_RS05215 0.16 -0.3 721,652 - SGL_RS05215 0.84 +0.3 721,722 - +0.6 721,751 + +2.5 721,945 + SGL_RS05220 0.29 +2.8
Or see this region's nucleotide sequence