Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04810

Experiment: Nickel (II) sulfate 3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS04805 and SGL_RS04810 are separated by 146 nucleotidesSGL_RS04810 and SGL_RS04815 are separated by 125 nucleotides SGL_RS04805: SGL_RS04805 - hypothetical protein, at 626,349 to 627,425 _RS04805 SGL_RS04810: SGL_RS04810 - AarF/ABC1/UbiB kinase family protein, at 627,572 to 629,272 _RS04810 SGL_RS04815: SGL_RS04815 - hypothetical protein, at 629,398 to 630,504 _RS04815 Position (kb) 627 628 629 630Strain fitness (log2 ratio) -1 0 1at 626.574 kb on + strand, within SGL_RS04805at 626.654 kb on - strand, within SGL_RS04805at 626.719 kb on + strand, within SGL_RS04805at 626.737 kb on - strand, within SGL_RS04805at 626.953 kb on + strand, within SGL_RS04805at 627.199 kb on - strand, within SGL_RS04805at 627.223 kb on - strand, within SGL_RS04805at 627.393 kb on - strandat 627.454 kb on + strandat 627.735 kb on + strandat 628.000 kb on + strand, within SGL_RS04810at 629.681 kb on - strand, within SGL_RS04815at 630.053 kb on + strand, within SGL_RS04815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM
remove
626,574 + SGL_RS04805 0.21 +0.0
626,654 - SGL_RS04805 0.28 -0.1
626,719 + SGL_RS04805 0.34 +0.1
626,737 - SGL_RS04805 0.36 -0.2
626,953 + SGL_RS04805 0.56 +0.4
627,199 - SGL_RS04805 0.79 +0.1
627,223 - SGL_RS04805 0.81 +0.1
627,393 - +0.0
627,454 + +0.4
627,735 + +0.1
628,000 + SGL_RS04810 0.25 -0.8
629,681 - SGL_RS04815 0.26 +0.0
630,053 + SGL_RS04815 0.59 +0.3

Or see this region's nucleotide sequence