Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03965 and SGL_RS03970 overlap by 21 nucleotides SGL_RS03970 and SGL_RS03975 are separated by 116 nucleotides
SGL_RS03965: SGL_RS03965 - R3H domain-containing nucleic acid-binding protein, at 442,164 to 443,933
_RS03965
SGL_RS03970: SGL_RS03970 - thiamine phosphate synthase, at 443,913 to 444,944
_RS03970
SGL_RS03975: SGL_RS03975 - BtpA/SgcQ family protein, at 445,061 to 445,924
_RS03975
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 442.940 kb on + strand, within SGL_RS03965 at 443.076 kb on + strand, within SGL_RS03965 at 443.093 kb on - strand, within SGL_RS03965 at 443.198 kb on + strand, within SGL_RS03965 at 443.358 kb on + strand, within SGL_RS03965 at 443.363 kb on + strand, within SGL_RS03965 at 443.371 kb on - strand, within SGL_RS03965 at 443.371 kb on - strand, within SGL_RS03965 at 443.371 kb on - strand, within SGL_RS03965 at 443.525 kb on + strand, within SGL_RS03965 at 443.561 kb on + strand, within SGL_RS03965 at 443.926 kb on - strand at 443.966 kb on + strand at 444.013 kb on - strand at 444.018 kb on - strand, within SGL_RS03970 at 444.072 kb on - strand, within SGL_RS03970 at 444.144 kb on + strand, within SGL_RS03970 at 444.152 kb on - strand, within SGL_RS03970 at 444.161 kb on + strand, within SGL_RS03970 at 444.426 kb on - strand, within SGL_RS03970 at 444.568 kb on + strand, within SGL_RS03970 at 444.623 kb on - strand, within SGL_RS03970 at 444.664 kb on - strand, within SGL_RS03970 at 444.783 kb on - strand, within SGL_RS03970 at 444.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 442,940 + SGL_RS03965 0.44 +1.5 443,076 + SGL_RS03965 0.52 +2.7 443,093 - SGL_RS03965 0.52 +1.7 443,198 + SGL_RS03965 0.58 +3.0 443,358 + SGL_RS03965 0.67 +2.3 443,363 + SGL_RS03965 0.68 +2.6 443,371 - SGL_RS03965 0.68 +2.2 443,371 - SGL_RS03965 0.68 +2.0 443,371 - SGL_RS03965 0.68 +2.3 443,525 + SGL_RS03965 0.77 +2.0 443,561 + SGL_RS03965 0.79 +2.2 443,926 - +1.9 443,966 + -3.0 444,013 - -3.0 444,018 - SGL_RS03970 0.10 -2.3 444,072 - SGL_RS03970 0.15 -3.0 444,144 + SGL_RS03970 0.22 -1.5 444,152 - SGL_RS03970 0.23 -1.9 444,161 + SGL_RS03970 0.24 -2.3 444,426 - SGL_RS03970 0.50 +0.5 444,568 + SGL_RS03970 0.63 -2.5 444,623 - SGL_RS03970 0.69 -1.1 444,664 - SGL_RS03970 0.73 -2.1 444,783 - SGL_RS03970 0.84 -1.5 444,899 - +0.5
Or see this region's nucleotide sequence