Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03675

Experiment: Nickel (II) sulfate 3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03670 and SGL_RS03675 are separated by 79 nucleotidesSGL_RS03675 and SGL_RS18670 are separated by 113 nucleotides SGL_RS03670: SGL_RS03670 - glycosyltransferase, at 376,485 to 377,639 _RS03670 SGL_RS03675: SGL_RS03675 - hypothetical protein, at 377,719 to 378,951 _RS03675 SGL_RS18670: SGL_RS18670 - IS630-like element ISTcSa family transposase, at 379,065 to 379,913 _RS18670 Position (kb) 377 378 379Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 376.884 kb on - strand, within SGL_RS03670at 376.888 kb on + strand, within SGL_RS03670at 376.910 kb on - strand, within SGL_RS03670at 377.193 kb on - strand, within SGL_RS03670at 377.983 kb on - strand, within SGL_RS03675at 378.229 kb on - strand, within SGL_RS03675

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM
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376,884 - SGL_RS03670 0.35 -4.9
376,888 + SGL_RS03670 0.35 -3.5
376,910 - SGL_RS03670 0.37 -3.5
377,193 - SGL_RS03670 0.61 -3.4
377,983 - SGL_RS03675 0.21 -3.7
378,229 - SGL_RS03675 0.41 -3.9

Or see this region's nucleotide sequence