Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03670

Experiment: Nickel (II) sulfate 3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03665 and SGL_RS03670 are separated by 52 nucleotidesSGL_RS03670 and SGL_RS03675 are separated by 79 nucleotides SGL_RS03665: SGL_RS03665 - GDP-mannose 4,6-dehydratase, at 375,470 to 376,432 _RS03665 SGL_RS03670: SGL_RS03670 - glycosyltransferase, at 376,485 to 377,639 _RS03670 SGL_RS03675: SGL_RS03675 - hypothetical protein, at 377,719 to 378,951 _RS03675 Position (kb) 376 377 378Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 375.636 kb on + strand, within SGL_RS03665at 375.735 kb on + strand, within SGL_RS03665at 375.930 kb on - strand, within SGL_RS03665at 376.084 kb on + strand, within SGL_RS03665at 376.128 kb on - strand, within SGL_RS03665at 376.158 kb on + strand, within SGL_RS03665at 376.159 kb on - strand, within SGL_RS03665at 376.161 kb on - strand, within SGL_RS03665at 376.218 kb on - strand, within SGL_RS03665at 376.321 kb on + strand, within SGL_RS03665at 376.387 kb on - strandat 376.536 kb on + strandat 376.884 kb on - strand, within SGL_RS03670at 376.888 kb on + strand, within SGL_RS03670at 376.910 kb on - strand, within SGL_RS03670at 377.193 kb on - strand, within SGL_RS03670at 377.983 kb on - strand, within SGL_RS03675at 378.229 kb on - strand, within SGL_RS03675

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM
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375,636 + SGL_RS03665 0.17 +0.7
375,735 + SGL_RS03665 0.28 +1.0
375,930 - SGL_RS03665 0.48 +0.8
376,084 + SGL_RS03665 0.64 +0.3
376,128 - SGL_RS03665 0.68 +0.6
376,158 + SGL_RS03665 0.71 +0.3
376,159 - SGL_RS03665 0.72 +0.6
376,161 - SGL_RS03665 0.72 +0.6
376,218 - SGL_RS03665 0.78 +0.5
376,321 + SGL_RS03665 0.88 +0.3
376,387 - +0.4
376,536 + -3.9
376,884 - SGL_RS03670 0.35 -4.9
376,888 + SGL_RS03670 0.35 -3.5
376,910 - SGL_RS03670 0.37 -3.5
377,193 - SGL_RS03670 0.61 -3.4
377,983 - SGL_RS03675 0.21 -3.7
378,229 - SGL_RS03675 0.41 -3.9

Or see this region's nucleotide sequence