Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03595 and SGL_RS03600 are separated by 69 nucleotides SGL_RS03600 and SGL_RS03605 are separated by 202 nucleotides SGL_RS03605 and SGL_RS03610 are separated by 80 nucleotides
SGL_RS03595: SGL_RS03595 - NAD-dependent epimerase/dehydratase family protein, at 362,185 to 363,420
_RS03595
SGL_RS03600: SGL_RS03600 - class I SAM-dependent methyltransferase, at 363,490 to 364,218
_RS03600
SGL_RS03605: SGL_RS03605 - cephalosporin hydroxylase family protein, at 364,421 to 364,996
_RS03605
SGL_RS03610: SGL_RS03610 - hypothetical protein, at 365,077 to 365,283
_RS03610
Position (kb) 363
364
365 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 362.794 kb on - strand, within SGL_RS03595 at 363.552 kb on - strand at 364.062 kb on - strand, within SGL_RS03600 at 364.102 kb on + strand, within SGL_RS03600 at 364.350 kb on - strand at 364.385 kb on - strand at 364.425 kb on - strand at 364.457 kb on + strand at 364.523 kb on - strand, within SGL_RS03605 at 364.686 kb on - strand, within SGL_RS03605 at 364.775 kb on + strand, within SGL_RS03605 at 364.775 kb on + strand, within SGL_RS03605 at 364.775 kb on + strand, within SGL_RS03605 at 364.775 kb on + strand, within SGL_RS03605 at 364.783 kb on - strand, within SGL_RS03605 at 364.783 kb on - strand, within SGL_RS03605 at 364.855 kb on + strand, within SGL_RS03605 at 364.863 kb on - strand, within SGL_RS03605 at 364.870 kb on + strand, within SGL_RS03605 at 364.876 kb on + strand, within SGL_RS03605 at 365.214 kb on - strand, within SGL_RS03610
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 362,794 - SGL_RS03595 0.49 -0.7 363,552 - -5.0 364,062 - SGL_RS03600 0.78 -2.0 364,102 + SGL_RS03600 0.84 -3.9 364,350 - -1.1 364,385 - -0.8 364,425 - -0.9 364,457 + -0.6 364,523 - SGL_RS03605 0.18 +0.3 364,686 - SGL_RS03605 0.46 -0.0 364,775 + SGL_RS03605 0.61 +0.3 364,775 + SGL_RS03605 0.61 -0.7 364,775 + SGL_RS03605 0.61 +0.2 364,775 + SGL_RS03605 0.61 -0.7 364,783 - SGL_RS03605 0.63 -0.3 364,783 - SGL_RS03605 0.63 -0.3 364,855 + SGL_RS03605 0.75 -0.5 364,863 - SGL_RS03605 0.77 -0.7 364,870 + SGL_RS03605 0.78 -0.9 364,876 + SGL_RS03605 0.79 -0.8 365,214 - SGL_RS03610 0.66 -0.5
Or see this region's nucleotide sequence