Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03430

Experiment: Nickel (II) sulfate 3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03425 and SGL_RS03430 are separated by 102 nucleotidesSGL_RS03430 and SGL_RS03435 are separated by 82 nucleotides SGL_RS03425: SGL_RS03425 - precorrin-3B C(17)-methyltransferase, at 331,144 to 333,027 _RS03425 SGL_RS03430: SGL_RS03430 - DUF4335 domain-containing protein, at 333,130 to 334,485 _RS03430 SGL_RS03435: SGL_RS03435 - 3-deoxy-7-phosphoheptulonate synthase, at 334,568 to 335,623 _RS03435 Position (kb) 333 334 335Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 332.228 kb on - strand, within SGL_RS03425at 332.255 kb on - strand, within SGL_RS03425at 332.618 kb on + strand, within SGL_RS03425at 332.764 kb on + strand, within SGL_RS03425at 332.775 kb on - strand, within SGL_RS03425at 333.061 kb on - strandat 333.167 kb on - strandat 333.182 kb on - strandat 333.190 kb on - strandat 333.606 kb on + strand, within SGL_RS03430at 333.874 kb on - strand, within SGL_RS03430at 334.020 kb on + strand, within SGL_RS03430at 334.066 kb on + strand, within SGL_RS03430at 334.142 kb on + strand, within SGL_RS03430at 334.307 kb on - strand, within SGL_RS03430at 334.332 kb on - strand, within SGL_RS03430at 334.352 kb on - strandat 334.421 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM
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332,228 - SGL_RS03425 0.58 -2.1
332,255 - SGL_RS03425 0.59 -1.9
332,618 + SGL_RS03425 0.78 -2.1
332,764 + SGL_RS03425 0.86 -2.1
332,775 - SGL_RS03425 0.87 -0.6
333,061 - -0.5
333,167 - -5.9
333,182 - -3.3
333,190 - -3.7
333,606 + SGL_RS03430 0.35 -2.2
333,874 - SGL_RS03430 0.55 -5.5
334,020 + SGL_RS03430 0.66 -4.8
334,066 + SGL_RS03430 0.69 -5.1
334,142 + SGL_RS03430 0.75 -3.3
334,307 - SGL_RS03430 0.87 -3.2
334,332 - SGL_RS03430 0.89 -6.1
334,352 - -4.0
334,421 - -1.6

Or see this region's nucleotide sequence