Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02785 and SGL_RS02790 are separated by 75 nucleotides SGL_RS02790 and SGL_RS02795 are separated by 67 nucleotides SGL_RS02795 and SGL_RS19405 are separated by 118 nucleotides SGL_RS19405 and SGL_RS02800 are separated by 46 nucleotides SGL_RS02800 and SGL_RS02805 are separated by 80 nucleotides
SGL_RS02785: SGL_RS02785 - CRR6 family NdhI maturation factor, at 194,310 to 194,801
_RS02785
SGL_RS02790: SGL_RS02790 - HEAT repeat domain-containing protein, at 194,877 to 195,617
_RS02790
SGL_RS02795: SGL_RS02795 - flavin prenyltransferase UbiX, at 195,685 to 196,305
_RS02795
SGL_RS19405: SGL_RS19405 - hypothetical protein, at 196,424 to 196,564
_RS19405
SGL_RS02800: SGL_RS02800 - hypothetical protein, at 196,611 to 196,991
_RS02800
SGL_RS02805: SGL_RS02805 - universal stress protein, at 197,072 to 197,557
_RS02805
Position (kb) 195
196
197 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 194.735 kb on - strand, within SGL_RS02785 at 194.757 kb on + strand at 194.817 kb on + strand at 194.830 kb on - strand at 194.830 kb on - strand at 195.096 kb on + strand, within SGL_RS02790 at 195.215 kb on - strand, within SGL_RS02790 at 195.220 kb on - strand, within SGL_RS02790 at 195.255 kb on + strand, within SGL_RS02790 at 195.923 kb on + strand, within SGL_RS02795 at 195.937 kb on - strand, within SGL_RS02795 at 195.992 kb on - strand, within SGL_RS02795 at 195.997 kb on - strand, within SGL_RS02795 at 196.230 kb on + strand, within SGL_RS02795 at 196.238 kb on - strand, within SGL_RS02795 at 196.334 kb on - strand at 196.357 kb on - strand at 196.448 kb on + strand, within SGL_RS19405 at 196.456 kb on - strand, within SGL_RS19405 at 196.607 kb on - strand at 196.763 kb on - strand, within SGL_RS02800 at 196.851 kb on + strand, within SGL_RS02800 at 196.882 kb on - strand, within SGL_RS02800 at 196.973 kb on + strand at 196.981 kb on - strand at 197.152 kb on + strand, within SGL_RS02805 at 197.152 kb on + strand, within SGL_RS02805 at 197.153 kb on + strand, within SGL_RS02805 at 197.155 kb on + strand, within SGL_RS02805 at 197.160 kb on - strand, within SGL_RS02805 at 197.276 kb on - strand, within SGL_RS02805
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 194,735 - SGL_RS02785 0.86 -3.4 194,757 + -4.7 194,817 + -0.1 194,830 - -0.0 194,830 - +0.2 195,096 + SGL_RS02790 0.30 +0.4 195,215 - SGL_RS02790 0.46 -0.9 195,220 - SGL_RS02790 0.46 +0.4 195,255 + SGL_RS02790 0.51 -2.8 195,923 + SGL_RS02795 0.38 -6.8 195,937 - SGL_RS02795 0.41 -5.2 195,992 - SGL_RS02795 0.49 -2.4 195,997 - SGL_RS02795 0.50 -4.9 196,230 + SGL_RS02795 0.88 -5.5 196,238 - SGL_RS02795 0.89 -6.8 196,334 - +0.2 196,357 - -0.4 196,448 + SGL_RS19405 0.17 -0.3 196,456 - SGL_RS19405 0.23 -0.1 196,607 - +0.0 196,763 - SGL_RS02800 0.40 -0.8 196,851 + SGL_RS02800 0.63 -0.7 196,882 - SGL_RS02800 0.71 -2.6 196,973 + -1.1 196,981 - -0.9 197,152 + SGL_RS02805 0.16 +0.0 197,152 + SGL_RS02805 0.16 +0.6 197,153 + SGL_RS02805 0.17 -0.1 197,155 + SGL_RS02805 0.17 +0.4 197,160 - SGL_RS02805 0.18 +0.4 197,276 - SGL_RS02805 0.42 -0.2
Or see this region's nucleotide sequence