Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02665

Experiment: Nickel (II) sulfate 3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS02655 and SGL_RS02660 are separated by 12 nucleotidesSGL_RS02660 and SGL_RS02665 are separated by 5 nucleotidesSGL_RS02665 and SGL_RS02670 are separated by 98 nucleotides SGL_RS02655: SGL_RS02655 - S41 family peptidase, at 168,533 to 169,921 _RS02655 SGL_RS02660: SGL_RS02660 - L-threonylcarbamoyladenylate synthase, at 169,934 to 170,566 _RS02660 SGL_RS02665: SGL_RS02665 - nickel pincer cofactor biosynthesis protein LarC, at 170,572 to 171,840 _RS02665 SGL_RS02670: SGL_RS02670 - F0F1 ATP synthase subunit gamma, at 171,939 to 172,883 _RS02670 Position (kb) 170 171 172Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 169.585 kb on + strand, within SGL_RS02655at 169.761 kb on + strand, within SGL_RS02655at 169.969 kb on - strandat 170.164 kb on - strand, within SGL_RS02660at 170.351 kb on - strand, within SGL_RS02660at 170.377 kb on + strand, within SGL_RS02660at 170.458 kb on - strand, within SGL_RS02660at 170.482 kb on - strand, within SGL_RS02660at 171.136 kb on + strand, within SGL_RS02665at 171.514 kb on - strand, within SGL_RS02665at 171.520 kb on + strand, within SGL_RS02665

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM
remove
169,585 + SGL_RS02655 0.76 -2.3
169,761 + SGL_RS02655 0.88 -1.7
169,969 - +0.5
170,164 - SGL_RS02660 0.36 +0.3
170,351 - SGL_RS02660 0.66 +0.9
170,377 + SGL_RS02660 0.70 +0.7
170,458 - SGL_RS02660 0.83 +0.9
170,482 - SGL_RS02660 0.87 +0.5
171,136 + SGL_RS02665 0.44 -2.8
171,514 - SGL_RS02665 0.74 -3.9
171,520 + SGL_RS02665 0.75 -2.6

Or see this region's nucleotide sequence