Experiment: Nickel (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02020 and SGL_RS02025 are separated by 180 nucleotides SGL_RS02025 and SGL_RS02030 are separated by 203 nucleotides
SGL_RS02020: SGL_RS02020 - AraC family transcriptional regulator, at 38,680 to 39,636
_RS02020
SGL_RS02025: SGL_RS02025 - TonB-dependent receptor, at 39,817 to 42,363
_RS02025
SGL_RS02030: SGL_RS02030 - iron-siderophore ABC transporter substrate-binding protein, at 42,567 to 43,397
_RS02030
Position (kb) 39
40
41
42
43 Strain fitness (log2 ratio) -1
0
1 at 38.818 kb on + strand, within SGL_RS02020 at 38.865 kb on + strand, within SGL_RS02020 at 38.911 kb on - strand, within SGL_RS02020 at 39.057 kb on - strand, within SGL_RS02020 at 39.180 kb on + strand, within SGL_RS02020 at 39.235 kb on + strand, within SGL_RS02020 at 39.235 kb on + strand, within SGL_RS02020 at 39.250 kb on - strand, within SGL_RS02020 at 39.859 kb on - strand at 39.891 kb on + strand at 39.912 kb on - strand at 39.939 kb on + strand at 39.946 kb on - strand at 39.981 kb on - strand at 40.015 kb on + strand at 40.058 kb on + strand at 40.164 kb on - strand, within SGL_RS02025 at 40.221 kb on - strand, within SGL_RS02025 at 40.351 kb on + strand, within SGL_RS02025 at 40.370 kb on + strand, within SGL_RS02025 at 40.409 kb on + strand, within SGL_RS02025 at 40.409 kb on - strand, within SGL_RS02025 at 40.415 kb on - strand, within SGL_RS02025 at 40.443 kb on + strand, within SGL_RS02025 at 40.497 kb on + strand, within SGL_RS02025 at 40.519 kb on - strand, within SGL_RS02025 at 40.545 kb on + strand, within SGL_RS02025 at 40.562 kb on + strand, within SGL_RS02025 at 40.630 kb on + strand, within SGL_RS02025 at 40.630 kb on + strand, within SGL_RS02025 at 40.640 kb on + strand, within SGL_RS02025 at 40.648 kb on - strand, within SGL_RS02025 at 40.699 kb on - strand, within SGL_RS02025 at 40.855 kb on - strand, within SGL_RS02025 at 40.855 kb on - strand, within SGL_RS02025 at 40.855 kb on - strand, within SGL_RS02025 at 40.884 kb on - strand, within SGL_RS02025 at 41.041 kb on - strand, within SGL_RS02025 at 41.199 kb on + strand, within SGL_RS02025 at 41.240 kb on + strand, within SGL_RS02025 at 41.442 kb on + strand, within SGL_RS02025 at 41.531 kb on + strand, within SGL_RS02025 at 41.565 kb on - strand, within SGL_RS02025 at 41.873 kb on - strand, within SGL_RS02025 at 41.930 kb on - strand, within SGL_RS02025 at 41.995 kb on + strand, within SGL_RS02025 at 42.117 kb on + strand at 42.245 kb on - strand at 42.523 kb on - strand at 42.593 kb on + strand at 42.604 kb on + strand at 42.612 kb on - strand at 42.612 kb on - strand at 42.620 kb on - strand at 42.703 kb on + strand, within SGL_RS02030 at 42.711 kb on - strand, within SGL_RS02030 at 42.744 kb on + strand, within SGL_RS02030 at 42.744 kb on - strand, within SGL_RS02030 at 42.825 kb on - strand, within SGL_RS02030 at 42.844 kb on + strand, within SGL_RS02030 at 42.935 kb on - strand, within SGL_RS02030 at 42.960 kb on + strand, within SGL_RS02030 at 42.978 kb on - strand, within SGL_RS02030 at 42.995 kb on + strand, within SGL_RS02030 at 42.995 kb on + strand, within SGL_RS02030 at 42.995 kb on + strand, within SGL_RS02030 at 43.003 kb on - strand, within SGL_RS02030 at 43.003 kb on - strand, within SGL_RS02030 at 43.003 kb on - strand, within SGL_RS02030 at 43.003 kb on - strand, within SGL_RS02030 at 43.003 kb on - strand, within SGL_RS02030 at 43.014 kb on - strand, within SGL_RS02030 at 43.148 kb on + strand, within SGL_RS02030 at 43.148 kb on - strand, within SGL_RS02030 at 43.223 kb on - strand, within SGL_RS02030 at 43.255 kb on + strand, within SGL_RS02030 at 43.304 kb on + strand, within SGL_RS02030 at 43.304 kb on + strand, within SGL_RS02030 at 43.312 kb on - strand, within SGL_RS02030 at 43.312 kb on - strand, within SGL_RS02030 at 43.312 kb on - strand, within SGL_RS02030 at 43.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 3 uM remove 38,818 + SGL_RS02020 0.14 +1.5 38,865 + SGL_RS02020 0.19 +0.0 38,911 - SGL_RS02020 0.24 -0.6 39,057 - SGL_RS02020 0.39 +0.7 39,180 + SGL_RS02020 0.52 -0.1 39,235 + SGL_RS02020 0.58 +0.1 39,235 + SGL_RS02020 0.58 +1.3 39,250 - SGL_RS02020 0.60 +0.4 39,859 - +0.2 39,891 + +0.0 39,912 - +0.5 39,939 + +0.1 39,946 - +0.5 39,981 - -0.1 40,015 + +0.0 40,058 + -0.2 40,164 - SGL_RS02025 0.14 -0.1 40,221 - SGL_RS02025 0.16 +0.4 40,351 + SGL_RS02025 0.21 +0.3 40,370 + SGL_RS02025 0.22 -0.4 40,409 + SGL_RS02025 0.23 +0.3 40,409 - SGL_RS02025 0.23 +0.8 40,415 - SGL_RS02025 0.23 +0.2 40,443 + SGL_RS02025 0.25 +0.1 40,497 + SGL_RS02025 0.27 +0.1 40,519 - SGL_RS02025 0.28 -0.0 40,545 + SGL_RS02025 0.29 +0.7 40,562 + SGL_RS02025 0.29 +0.1 40,630 + SGL_RS02025 0.32 +0.1 40,630 + SGL_RS02025 0.32 +0.3 40,640 + SGL_RS02025 0.32 +0.4 40,648 - SGL_RS02025 0.33 -0.5 40,699 - SGL_RS02025 0.35 +0.5 40,855 - SGL_RS02025 0.41 +0.0 40,855 - SGL_RS02025 0.41 +0.2 40,855 - SGL_RS02025 0.41 +0.3 40,884 - SGL_RS02025 0.42 -0.1 41,041 - SGL_RS02025 0.48 +0.1 41,199 + SGL_RS02025 0.54 +0.0 41,240 + SGL_RS02025 0.56 +0.1 41,442 + SGL_RS02025 0.64 +0.3 41,531 + SGL_RS02025 0.67 -0.3 41,565 - SGL_RS02025 0.69 +0.2 41,873 - SGL_RS02025 0.81 +0.6 41,930 - SGL_RS02025 0.83 +0.1 41,995 + SGL_RS02025 0.86 +0.0 42,117 + -0.2 42,245 - -0.2 42,523 - +0.5 42,593 + +0.5 42,604 + -0.3 42,612 - +0.0 42,612 - +0.3 42,620 - +1.1 42,703 + SGL_RS02030 0.16 -0.5 42,711 - SGL_RS02030 0.17 -0.4 42,744 + SGL_RS02030 0.21 +0.6 42,744 - SGL_RS02030 0.21 -0.0 42,825 - SGL_RS02030 0.31 -0.4 42,844 + SGL_RS02030 0.33 +0.2 42,935 - SGL_RS02030 0.44 +0.1 42,960 + SGL_RS02030 0.47 +0.1 42,978 - SGL_RS02030 0.49 -0.3 42,995 + SGL_RS02030 0.52 +0.4 42,995 + SGL_RS02030 0.52 +0.1 42,995 + SGL_RS02030 0.52 +0.4 43,003 - SGL_RS02030 0.52 +0.3 43,003 - SGL_RS02030 0.52 +0.4 43,003 - SGL_RS02030 0.52 +0.1 43,003 - SGL_RS02030 0.52 +0.1 43,003 - SGL_RS02030 0.52 -0.3 43,014 - SGL_RS02030 0.54 +1.0 43,148 + SGL_RS02030 0.70 -0.1 43,148 - SGL_RS02030 0.70 +0.0 43,223 - SGL_RS02030 0.79 +0.4 43,255 + SGL_RS02030 0.83 +0.6 43,304 + SGL_RS02030 0.89 +0.2 43,304 + SGL_RS02030 0.89 -1.6 43,312 - SGL_RS02030 0.90 +0.3 43,312 - SGL_RS02030 0.90 +0.3 43,312 - SGL_RS02030 0.90 +0.0 43,362 - +0.0
Or see this region's nucleotide sequence