Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS19400

Experiment: Bathocuproine disulfonic 0.3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS01910 and SGL_RS19400 overlap by 11 nucleotidesSGL_RS19400 and SGL_RS01915 are separated by 41 nucleotides SGL_RS01910: SGL_RS01910 - photosystem II q(b) protein, at 7,229 to 8,311 _RS01910 SGL_RS19400: SGL_RS19400 - hypothetical protein, at 8,301 to 8,450 _RS19400 SGL_RS01915: SGL_RS01915 - biosynthetic arginine decarboxylase, at 8,492 to 10,471 _RS01915 Position (kb) 8 9Strain fitness (log2 ratio) -1 0 1at 8.356 kb on + strand, within SGL_RS19400at 8.455 kb on - strandat 8.455 kb on - strandat 8.505 kb on - strandat 8.587 kb on - strandat 8.803 kb on - strand, within SGL_RS01915at 8.815 kb on + strand, within SGL_RS01915at 8.815 kb on + strand, within SGL_RS01915at 8.855 kb on - strand, within SGL_RS01915at 9.067 kb on - strand, within SGL_RS01915at 9.141 kb on - strand, within SGL_RS01915at 9.169 kb on + strand, within SGL_RS01915at 9.175 kb on - strand, within SGL_RS01915at 9.223 kb on + strand, within SGL_RS01915at 9.236 kb on - strand, within SGL_RS01915at 9.448 kb on + strand, within SGL_RS01915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bathocuproine disulfonic 0.3 mM
remove
8,356 + SGL_RS19400 0.37 -1.0
8,455 - +0.4
8,455 - +0.5
8,505 - +1.1
8,587 - +0.5
8,803 - SGL_RS01915 0.16 +0.6
8,815 + SGL_RS01915 0.16 +0.1
8,815 + SGL_RS01915 0.16 -0.5
8,855 - SGL_RS01915 0.18 +0.5
9,067 - SGL_RS01915 0.29 -0.3
9,141 - SGL_RS01915 0.33 +0.7
9,169 + SGL_RS01915 0.34 +0.2
9,175 - SGL_RS01915 0.34 -0.2
9,223 + SGL_RS01915 0.37 -0.0
9,236 - SGL_RS01915 0.38 +0.1
9,448 + SGL_RS01915 0.48 +0.3

Or see this region's nucleotide sequence