Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09975

Experiment: Bathocuproine disulfonic 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09965 and SGL_RS09970 are separated by 16 nucleotidesSGL_RS09970 and SGL_RS09975 are separated by 30 nucleotidesSGL_RS09975 and SGL_RS09980 are separated by 92 nucleotidesSGL_RS09980 and SGL_RS09985 are separated by 102 nucleotides SGL_RS09965: SGL_RS09965 - GTP-binding protein, at 1,716,932 to 1,718,293 _RS09965 SGL_RS09970: SGL_RS09970 - DUF29 domain-containing protein, at 1,718,310 to 1,718,789 _RS09970 SGL_RS09975: SGL_RS09975 - DUF29 domain-containing protein, at 1,718,820 to 1,719,263 _RS09975 SGL_RS09980: SGL_RS09980 - ssl1498 family light-harvesting-like protein, at 1,719,356 to 1,719,541 _RS09980 SGL_RS09985: SGL_RS09985 - cation diffusion facilitator family transporter, at 1,719,644 to 1,720,576 _RS09985 Position (kb) 1718 1719 1720Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1718.275 kb on - strandat 1718.361 kb on + strand, within SGL_RS09970at 1718.408 kb on - strand, within SGL_RS09970at 1718.475 kb on - strand, within SGL_RS09970at 1718.722 kb on + strand, within SGL_RS09970at 1718.782 kb on - strandat 1718.866 kb on + strand, within SGL_RS09975at 1718.919 kb on + strand, within SGL_RS09975at 1718.933 kb on - strand, within SGL_RS09975at 1718.980 kb on - strand, within SGL_RS09975at 1718.987 kb on - strand, within SGL_RS09975at 1719.015 kb on - strand, within SGL_RS09975at 1719.056 kb on - strand, within SGL_RS09975at 1719.608 kb on - strandat 1719.713 kb on - strandat 1719.717 kb on + strandat 1719.724 kb on + strandat 1719.750 kb on - strand, within SGL_RS09985at 1719.793 kb on + strand, within SGL_RS09985at 1719.794 kb on + strand, within SGL_RS09985at 1719.801 kb on - strand, within SGL_RS09985at 1719.801 kb on - strand, within SGL_RS09985at 1719.803 kb on + strand, within SGL_RS09985at 1719.858 kb on + strand, within SGL_RS09985at 1719.946 kb on - strand, within SGL_RS09985at 1719.974 kb on + strand, within SGL_RS09985at 1720.008 kb on - strand, within SGL_RS09985at 1720.015 kb on + strand, within SGL_RS09985at 1720.053 kb on - strand, within SGL_RS09985at 1720.157 kb on + strand, within SGL_RS09985at 1720.197 kb on + strand, within SGL_RS09985at 1720.197 kb on + strand, within SGL_RS09985at 1720.202 kb on + strand, within SGL_RS09985at 1720.202 kb on + strand, within SGL_RS09985at 1720.210 kb on - strand, within SGL_RS09985

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Per-strain Table

Position Strand Gene LocusTag Fraction Bathocuproine disulfonic 0.3 mM
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1,718,275 - -2.8
1,718,361 + SGL_RS09970 0.11 -3.1
1,718,408 - SGL_RS09970 0.20 -1.0
1,718,475 - SGL_RS09970 0.34 -1.1
1,718,722 + SGL_RS09970 0.86 -4.6
1,718,782 - -2.7
1,718,866 + SGL_RS09975 0.10 -3.7
1,718,919 + SGL_RS09975 0.22 -3.0
1,718,933 - SGL_RS09975 0.25 -1.9
1,718,980 - SGL_RS09975 0.36 -0.5
1,718,987 - SGL_RS09975 0.38 +0.1
1,719,015 - SGL_RS09975 0.44 +0.7
1,719,056 - SGL_RS09975 0.53 -0.6
1,719,608 - +0.0
1,719,713 - +0.4
1,719,717 + +0.3
1,719,724 + +0.0
1,719,750 - SGL_RS09985 0.11 +0.2
1,719,793 + SGL_RS09985 0.16 -0.4
1,719,794 + SGL_RS09985 0.16 -0.2
1,719,801 - SGL_RS09985 0.17 +1.2
1,719,801 - SGL_RS09985 0.17 +0.3
1,719,803 + SGL_RS09985 0.17 -0.2
1,719,858 + SGL_RS09985 0.23 -0.3
1,719,946 - SGL_RS09985 0.32 -0.2
1,719,974 + SGL_RS09985 0.35 -0.1
1,720,008 - SGL_RS09985 0.39 +0.4
1,720,015 + SGL_RS09985 0.40 -0.0
1,720,053 - SGL_RS09985 0.44 +0.1
1,720,157 + SGL_RS09985 0.55 +0.1
1,720,197 + SGL_RS09985 0.59 +0.5
1,720,197 + SGL_RS09985 0.59 -0.2
1,720,202 + SGL_RS09985 0.60 +0.8
1,720,202 + SGL_RS09985 0.60 -0.1
1,720,210 - SGL_RS09985 0.61 +0.5

Or see this region's nucleotide sequence