Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02520

Experiment: Bathocuproine disulfonic 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02515 and SGL_RS02520 are separated by 234 nucleotidesSGL_RS02520 and SGL_RS02525 are separated by 10 nucleotidesSGL_RS02525 and SGL_RS02530 are separated by 82 nucleotides SGL_RS02515: SGL_RS02515 - M56 family metallopeptidase, at 142,981 to 143,826 _RS02515 SGL_RS02520: SGL_RS02520 - thioredoxin-dependent thiol peroxidase, at 144,061 to 144,543 _RS02520 SGL_RS02525: SGL_RS02525 - hypothetical protein, at 144,554 to 145,081 _RS02525 SGL_RS02530: SGL_RS02530 - MTH1187 family thiamine-binding protein, at 145,164 to 145,529 _RS02530 Position (kb) 144 145Strain fitness (log2 ratio) -3 -2 -1 0 1at 143.210 kb on + strand, within SGL_RS02515at 143.343 kb on + strand, within SGL_RS02515at 143.357 kb on + strand, within SGL_RS02515at 143.419 kb on + strand, within SGL_RS02515at 143.543 kb on + strand, within SGL_RS02515at 143.664 kb on + strand, within SGL_RS02515at 143.927 kb on + strandat 144.473 kb on - strand, within SGL_RS02520at 144.531 kb on - strandat 144.693 kb on - strand, within SGL_RS02525at 144.766 kb on + strand, within SGL_RS02525at 144.821 kb on + strand, within SGL_RS02525at 145.410 kb on - strand, within SGL_RS02530at 145.499 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bathocuproine disulfonic 0.3 mM
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143,210 + SGL_RS02515 0.27 -0.4
143,343 + SGL_RS02515 0.43 +0.1
143,357 + SGL_RS02515 0.44 -0.2
143,419 + SGL_RS02515 0.52 -0.4
143,543 + SGL_RS02515 0.66 -0.6
143,664 + SGL_RS02515 0.81 +0.0
143,927 + -0.3
144,473 - SGL_RS02520 0.85 -2.1
144,531 - -1.4
144,693 - SGL_RS02525 0.26 +0.7
144,766 + SGL_RS02525 0.40 -2.4
144,821 + SGL_RS02525 0.51 -2.8
145,410 - SGL_RS02530 0.67 +0.3
145,499 - -0.1

Or see this region's nucleotide sequence