Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS20015

Experiment: Copper (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15810 and SGL_RS20010 are separated by 369 nucleotidesSGL_RS20010 and SGL_RS20015 are separated by 158 nucleotidesSGL_RS20015 and SGL_RS15825 are separated by 255 nucleotides SGL_RS15810: SGL_RS15810 - phycocyanobilin:ferredoxin oxidoreductase, at 2,996,695 to 2,997,441 _RS15810 SGL_RS20010: SGL_RS20010 - transposase, at 2,997,811 to 2,998,080 _RS20010 SGL_RS20015: SGL_RS20015 - IS701 family transposase, at 2,998,239 to 2,998,925 _RS20015 SGL_RS15825: SGL_RS15825 - phosphomethylpyrimidine synthase, at 2,999,181 to 3,000,560 _RS15825 Position (kb) 2998 2999Strain fitness (log2 ratio) -2 -1 0 1at 2997.626 kb on - strandat 2998.266 kb on + strandat 2998.266 kb on + strandat 2998.973 kb on + strandat 2999.025 kb on + strandat 2999.025 kb on + strandat 2999.690 kb on + strand, within SGL_RS15825

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Per-strain Table

Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM
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2,997,626 - +0.1
2,998,266 + -0.5
2,998,266 + -0.4
2,998,973 + +0.1
2,999,025 + -0.4
2,999,025 + +0.3
2,999,690 + SGL_RS15825 0.37 -1.8

Or see this region's nucleotide sequence