Experiment: Copper (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18050 and SGL_RS18055 are separated by 110 nucleotides SGL_RS18055 and SGL_RS18060 are separated by 198 nucleotides SGL_RS18060 and SGL_RS18065 are separated by 237 nucleotides SGL_RS18065 and SGL_RS19145 are separated by 26 nucleotides
SGL_RS18050: SGL_RS18050 - tRNA pseudouridine(55) synthase TruB, at 3,508,111 to 3,509,001
_RS18050
SGL_RS18055: SGL_RS18055 - HAD family hydrolase, at 3,509,112 to 3,509,747
_RS18055
SGL_RS18060: SGL_RS18060 - S8 family serine peptidase, at 3,509,946 to 3,511,580
_RS18060
SGL_RS18065: SGL_RS18065 - IS701 family transposase, at 3,511,818 to 3,512,288
_RS18065
SGL_RS19145: SGL_RS19145 - IS630-like element ISTcSa family transposase, at 3,512,315 to 3,513,163
_RS19145
Position (kb)
3509
3510
3511
3512 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3508.980 kb on - strand at 3509.192 kb on - strand, within SGL_RS18055 at 3509.197 kb on + strand, within SGL_RS18055 at 3509.224 kb on - strand, within SGL_RS18055 at 3509.240 kb on + strand, within SGL_RS18055 at 3509.414 kb on + strand, within SGL_RS18055 at 3509.750 kb on - strand at 3509.927 kb on + strand at 3510.048 kb on - strand at 3510.053 kb on - strand at 3510.124 kb on + strand, within SGL_RS18060 at 3510.124 kb on + strand, within SGL_RS18060 at 3510.145 kb on + strand, within SGL_RS18060 at 3510.293 kb on + strand, within SGL_RS18060 at 3510.299 kb on + strand, within SGL_RS18060 at 3510.307 kb on - strand, within SGL_RS18060 at 3510.315 kb on + strand, within SGL_RS18060 at 3510.393 kb on + strand, within SGL_RS18060 at 3510.466 kb on + strand, within SGL_RS18060 at 3510.580 kb on + strand, within SGL_RS18060 at 3510.641 kb on + strand, within SGL_RS18060 at 3510.641 kb on + strand, within SGL_RS18060 at 3510.641 kb on + strand, within SGL_RS18060 at 3510.649 kb on - strand, within SGL_RS18060 at 3510.649 kb on - strand, within SGL_RS18060 at 3510.649 kb on - strand, within SGL_RS18060 at 3510.649 kb on - strand, within SGL_RS18060 at 3510.858 kb on - strand, within SGL_RS18060 at 3510.869 kb on + strand, within SGL_RS18060 at 3510.877 kb on + strand, within SGL_RS18060 at 3511.087 kb on + strand, within SGL_RS18060 at 3511.157 kb on + strand, within SGL_RS18060 at 3511.173 kb on - strand, within SGL_RS18060 at 3511.370 kb on + strand, within SGL_RS18060 at 3511.419 kb on - strand at 3511.554 kb on - strand at 3511.569 kb on + strand at 3511.584 kb on + strand at 3511.595 kb on + strand at 3511.603 kb on - strand at 3512.284 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM remove 3,508,980 - -2.6 3,509,192 - SGL_RS18055 0.13 +1.8 3,509,197 + SGL_RS18055 0.13 +1.2 3,509,224 - SGL_RS18055 0.18 +1.7 3,509,240 + SGL_RS18055 0.20 +1.2 3,509,414 + SGL_RS18055 0.47 +1.2 3,509,750 - +0.0 3,509,927 + +0.1 3,510,048 - -2.0 3,510,053 - -1.9 3,510,124 + SGL_RS18060 0.11 -2.1 3,510,124 + SGL_RS18060 0.11 -2.3 3,510,145 + SGL_RS18060 0.12 -1.6 3,510,293 + SGL_RS18060 0.21 -2.0 3,510,299 + SGL_RS18060 0.22 -0.5 3,510,307 - SGL_RS18060 0.22 -1.5 3,510,315 + SGL_RS18060 0.23 -1.0 3,510,393 + SGL_RS18060 0.27 -1.3 3,510,466 + SGL_RS18060 0.32 -1.8 3,510,580 + SGL_RS18060 0.39 -1.6 3,510,641 + SGL_RS18060 0.43 -2.3 3,510,641 + SGL_RS18060 0.43 -1.5 3,510,641 + SGL_RS18060 0.43 -2.1 3,510,649 - SGL_RS18060 0.43 -2.0 3,510,649 - SGL_RS18060 0.43 -1.3 3,510,649 - SGL_RS18060 0.43 -1.9 3,510,649 - SGL_RS18060 0.43 -1.6 3,510,858 - SGL_RS18060 0.56 -2.4 3,510,869 + SGL_RS18060 0.56 -2.9 3,510,877 + SGL_RS18060 0.57 -1.3 3,511,087 + SGL_RS18060 0.70 -1.9 3,511,157 + SGL_RS18060 0.74 -1.8 3,511,173 - SGL_RS18060 0.75 -1.8 3,511,370 + SGL_RS18060 0.87 -1.3 3,511,419 - -0.9 3,511,554 - -1.4 3,511,569 + +0.6 3,511,584 + +0.6 3,511,595 + -0.6 3,511,603 - +0.1 3,512,284 + -0.1
Or see this region's nucleotide sequence