Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18060

Experiment: Copper (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18050 and SGL_RS18055 are separated by 110 nucleotidesSGL_RS18055 and SGL_RS18060 are separated by 198 nucleotidesSGL_RS18060 and SGL_RS18065 are separated by 237 nucleotidesSGL_RS18065 and SGL_RS19145 are separated by 26 nucleotides SGL_RS18050: SGL_RS18050 - tRNA pseudouridine(55) synthase TruB, at 3,508,111 to 3,509,001 _RS18050 SGL_RS18055: SGL_RS18055 - HAD family hydrolase, at 3,509,112 to 3,509,747 _RS18055 SGL_RS18060: SGL_RS18060 - S8 family serine peptidase, at 3,509,946 to 3,511,580 _RS18060 SGL_RS18065: SGL_RS18065 - IS701 family transposase, at 3,511,818 to 3,512,288 _RS18065 SGL_RS19145: SGL_RS19145 - IS630-like element ISTcSa family transposase, at 3,512,315 to 3,513,163 _RS19145 Position (kb) 3509 3510 3511 3512Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3508.980 kb on - strandat 3509.192 kb on - strand, within SGL_RS18055at 3509.197 kb on + strand, within SGL_RS18055at 3509.224 kb on - strand, within SGL_RS18055at 3509.240 kb on + strand, within SGL_RS18055at 3509.414 kb on + strand, within SGL_RS18055at 3509.750 kb on - strandat 3509.927 kb on + strandat 3510.048 kb on - strandat 3510.053 kb on - strandat 3510.124 kb on + strand, within SGL_RS18060at 3510.124 kb on + strand, within SGL_RS18060at 3510.145 kb on + strand, within SGL_RS18060at 3510.293 kb on + strand, within SGL_RS18060at 3510.299 kb on + strand, within SGL_RS18060at 3510.307 kb on - strand, within SGL_RS18060at 3510.315 kb on + strand, within SGL_RS18060at 3510.393 kb on + strand, within SGL_RS18060at 3510.466 kb on + strand, within SGL_RS18060at 3510.580 kb on + strand, within SGL_RS18060at 3510.641 kb on + strand, within SGL_RS18060at 3510.641 kb on + strand, within SGL_RS18060at 3510.641 kb on + strand, within SGL_RS18060at 3510.649 kb on - strand, within SGL_RS18060at 3510.649 kb on - strand, within SGL_RS18060at 3510.649 kb on - strand, within SGL_RS18060at 3510.649 kb on - strand, within SGL_RS18060at 3510.858 kb on - strand, within SGL_RS18060at 3510.869 kb on + strand, within SGL_RS18060at 3510.877 kb on + strand, within SGL_RS18060at 3511.087 kb on + strand, within SGL_RS18060at 3511.157 kb on + strand, within SGL_RS18060at 3511.173 kb on - strand, within SGL_RS18060at 3511.370 kb on + strand, within SGL_RS18060at 3511.419 kb on - strandat 3511.554 kb on - strandat 3511.569 kb on + strandat 3511.584 kb on + strandat 3511.595 kb on + strandat 3511.603 kb on - strandat 3512.284 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM
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3,508,980 - -2.6
3,509,192 - SGL_RS18055 0.13 +1.8
3,509,197 + SGL_RS18055 0.13 +1.2
3,509,224 - SGL_RS18055 0.18 +1.7
3,509,240 + SGL_RS18055 0.20 +1.2
3,509,414 + SGL_RS18055 0.47 +1.2
3,509,750 - +0.0
3,509,927 + +0.1
3,510,048 - -2.0
3,510,053 - -1.9
3,510,124 + SGL_RS18060 0.11 -2.1
3,510,124 + SGL_RS18060 0.11 -2.3
3,510,145 + SGL_RS18060 0.12 -1.6
3,510,293 + SGL_RS18060 0.21 -2.0
3,510,299 + SGL_RS18060 0.22 -0.5
3,510,307 - SGL_RS18060 0.22 -1.5
3,510,315 + SGL_RS18060 0.23 -1.0
3,510,393 + SGL_RS18060 0.27 -1.3
3,510,466 + SGL_RS18060 0.32 -1.8
3,510,580 + SGL_RS18060 0.39 -1.6
3,510,641 + SGL_RS18060 0.43 -2.3
3,510,641 + SGL_RS18060 0.43 -1.5
3,510,641 + SGL_RS18060 0.43 -2.1
3,510,649 - SGL_RS18060 0.43 -2.0
3,510,649 - SGL_RS18060 0.43 -1.3
3,510,649 - SGL_RS18060 0.43 -1.9
3,510,649 - SGL_RS18060 0.43 -1.6
3,510,858 - SGL_RS18060 0.56 -2.4
3,510,869 + SGL_RS18060 0.56 -2.9
3,510,877 + SGL_RS18060 0.57 -1.3
3,511,087 + SGL_RS18060 0.70 -1.9
3,511,157 + SGL_RS18060 0.74 -1.8
3,511,173 - SGL_RS18060 0.75 -1.8
3,511,370 + SGL_RS18060 0.87 -1.3
3,511,419 - -0.9
3,511,554 - -1.4
3,511,569 + +0.6
3,511,584 + +0.6
3,511,595 + -0.6
3,511,603 - +0.1
3,512,284 + -0.1

Or see this region's nucleotide sequence