Experiment: Copper (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17830 and SGL_RS17835 are separated by 383 nucleotides SGL_RS17835 and SGL_RS17840 are separated by 42 nucleotides SGL_RS17840 and SGL_RS17845 are separated by 62 nucleotides
SGL_RS17830: SGL_RS17830 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase, at 3,458,330 to 3,459,397
_RS17830
SGL_RS17835: SGL_RS17835 - diguanylate cyclase, at 3,459,781 to 3,460,608
_RS17835
SGL_RS17840: SGL_RS17840 - hypothetical protein, at 3,460,651 to 3,461,250
_RS17840
SGL_RS17845: SGL_RS17845 - hypothetical protein, at 3,461,313 to 3,461,654
_RS17845
Position (kb)
3459
3460
3461 Strain fitness (log2 ratio)
-1
0
1 at 3459.410 kb on - strand at 3459.525 kb on + strand at 3459.636 kb on - strand at 3459.638 kb on + strand at 3460.125 kb on + strand, within SGL_RS17835 at 3460.190 kb on - strand, within SGL_RS17835 at 3460.380 kb on + strand, within SGL_RS17835 at 3460.404 kb on - strand, within SGL_RS17835 at 3460.503 kb on + strand, within SGL_RS17835 at 3460.537 kb on - strand at 3460.582 kb on + strand at 3460.582 kb on + strand at 3460.636 kb on + strand at 3460.636 kb on - strand at 3460.655 kb on + strand at 3460.775 kb on + strand, within SGL_RS17840 at 3460.802 kb on - strand, within SGL_RS17840 at 3460.847 kb on + strand, within SGL_RS17840 at 3460.883 kb on + strand, within SGL_RS17840 at 3460.941 kb on - strand, within SGL_RS17840 at 3460.960 kb on - strand, within SGL_RS17840 at 3461.229 kb on - strand at 3461.244 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM remove 3,459,410 - -0.1 3,459,525 + -1.1 3,459,636 - -0.0 3,459,638 + +0.1 3,460,125 + SGL_RS17835 0.42 +0.5 3,460,190 - SGL_RS17835 0.49 +0.1 3,460,380 + SGL_RS17835 0.72 -0.6 3,460,404 - SGL_RS17835 0.75 -0.0 3,460,503 + SGL_RS17835 0.87 -0.0 3,460,537 - +0.4 3,460,582 + +0.2 3,460,582 + -0.1 3,460,636 + -0.2 3,460,636 - +0.7 3,460,655 + -0.4 3,460,775 + SGL_RS17840 0.21 -0.0 3,460,802 - SGL_RS17840 0.25 -0.3 3,460,847 + SGL_RS17840 0.33 -0.7 3,460,883 + SGL_RS17840 0.39 +0.0 3,460,941 - SGL_RS17840 0.48 -1.0 3,460,960 - SGL_RS17840 0.52 -0.3 3,461,229 - +0.2 3,461,244 + -0.8
Or see this region's nucleotide sequence