Experiment: Copper (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17810 and SGL_RS17815 are separated by 193 nucleotides SGL_RS17815 and SGL_RS17820 are separated by 504 nucleotides
SGL_RS17810: SGL_RS17810 - iron uptake porin, at 3,454,422 to 3,456,044
_RS17810
SGL_RS17815: SGL_RS17815 - histidine phosphatase family protein, at 3,456,238 to 3,456,954
_RS17815
SGL_RS17820: SGL_RS17820 - photosystem I reaction center protein subunit XI, at 3,457,459 to 3,457,932
_RS17820
Position (kb)
3456
3457 Strain fitness (log2 ratio)
-1
0
1 at 3455.296 kb on + strand, within SGL_RS17810 at 3455.328 kb on + strand, within SGL_RS17810 at 3455.338 kb on + strand, within SGL_RS17810 at 3455.420 kb on + strand, within SGL_RS17810 at 3455.507 kb on + strand, within SGL_RS17810 at 3455.532 kb on - strand, within SGL_RS17810 at 3455.581 kb on + strand, within SGL_RS17810 at 3455.648 kb on - strand, within SGL_RS17810 at 3455.826 kb on + strand, within SGL_RS17810 at 3455.839 kb on + strand, within SGL_RS17810 at 3455.866 kb on + strand, within SGL_RS17810 at 3455.869 kb on - strand, within SGL_RS17810 at 3455.902 kb on + strand at 3455.910 kb on - strand at 3456.010 kb on + strand at 3456.016 kb on + strand at 3456.041 kb on + strand at 3456.041 kb on + strand at 3456.066 kb on - strand at 3456.316 kb on - strand, within SGL_RS17815 at 3456.336 kb on - strand, within SGL_RS17815 at 3456.473 kb on - strand, within SGL_RS17815 at 3456.614 kb on + strand, within SGL_RS17815 at 3456.614 kb on + strand, within SGL_RS17815 at 3456.614 kb on + strand, within SGL_RS17815 at 3456.622 kb on - strand, within SGL_RS17815 at 3456.692 kb on + strand, within SGL_RS17815 at 3456.700 kb on - strand, within SGL_RS17815 at 3456.715 kb on - strand, within SGL_RS17815 at 3456.720 kb on - strand, within SGL_RS17815 at 3456.843 kb on + strand, within SGL_RS17815 at 3456.843 kb on + strand, within SGL_RS17815 at 3456.843 kb on + strand, within SGL_RS17815 at 3456.843 kb on + strand, within SGL_RS17815 at 3456.851 kb on - strand, within SGL_RS17815 at 3456.851 kb on - strand, within SGL_RS17815 at 3456.996 kb on + strand at 3457.119 kb on + strand at 3457.119 kb on + strand at 3457.215 kb on + strand at 3457.233 kb on - strand at 3457.301 kb on - strand at 3457.315 kb on + strand at 3457.315 kb on + strand at 3457.469 kb on - strand at 3457.494 kb on + strand at 3457.599 kb on + strand, within SGL_RS17820 at 3457.711 kb on + strand, within SGL_RS17820
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM remove 3,455,296 + SGL_RS17810 0.54 -0.5 3,455,328 + SGL_RS17810 0.56 -1.6 3,455,338 + SGL_RS17810 0.56 -1.5 3,455,420 + SGL_RS17810 0.61 -1.2 3,455,507 + SGL_RS17810 0.67 -0.3 3,455,532 - SGL_RS17810 0.68 -0.7 3,455,581 + SGL_RS17810 0.71 -0.8 3,455,648 - SGL_RS17810 0.76 -0.7 3,455,826 + SGL_RS17810 0.87 -0.8 3,455,839 + SGL_RS17810 0.87 -0.5 3,455,866 + SGL_RS17810 0.89 -0.5 3,455,869 - SGL_RS17810 0.89 -1.2 3,455,902 + -0.7 3,455,910 - -0.8 3,456,010 + -0.3 3,456,016 + -0.9 3,456,041 + -0.7 3,456,041 + -0.6 3,456,066 - -0.7 3,456,316 - SGL_RS17815 0.11 -0.2 3,456,336 - SGL_RS17815 0.14 -1.1 3,456,473 - SGL_RS17815 0.33 -0.6 3,456,614 + SGL_RS17815 0.52 -0.9 3,456,614 + SGL_RS17815 0.52 -0.8 3,456,614 + SGL_RS17815 0.52 -0.5 3,456,622 - SGL_RS17815 0.54 -0.1 3,456,692 + SGL_RS17815 0.63 -0.7 3,456,700 - SGL_RS17815 0.64 -0.8 3,456,715 - SGL_RS17815 0.67 -0.4 3,456,720 - SGL_RS17815 0.67 -0.1 3,456,843 + SGL_RS17815 0.84 -1.1 3,456,843 + SGL_RS17815 0.84 -0.3 3,456,843 + SGL_RS17815 0.84 +1.0 3,456,843 + SGL_RS17815 0.84 -0.6 3,456,851 - SGL_RS17815 0.85 -0.6 3,456,851 - SGL_RS17815 0.85 -0.4 3,456,996 + +0.2 3,457,119 + +0.2 3,457,119 + +0.3 3,457,215 + +0.8 3,457,233 - -1.5 3,457,301 - -0.1 3,457,315 + -0.1 3,457,315 + +0.1 3,457,469 - -0.8 3,457,494 + +0.4 3,457,599 + SGL_RS17820 0.30 -0.6 3,457,711 + SGL_RS17820 0.53 -0.8
Or see this region's nucleotide sequence