Experiment: Copper (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15825 and SGL_RS15830 are separated by 225 nucleotides SGL_RS15830 and SGL_RS15835 are separated by 332 nucleotides
SGL_RS15825: SGL_RS15825 - phosphomethylpyrimidine synthase, at 2,999,181 to 3,000,560
_RS15825
SGL_RS15830: SGL_RS15830 - YihY/virulence factor BrkB family protein, at 3,000,786 to 3,001,742
_RS15830
SGL_RS15835: SGL_RS15835 - TrmJ/YjtD family RNA methyltransferase, at 3,002,075 to 3,002,797
_RS15835
Position (kb)
3000
3001
3002 Strain fitness (log2 ratio)
-1
0
1
2 at 3000.561 kb on + strand at 3000.669 kb on - strand at 3000.733 kb on + strand at 3000.744 kb on + strand at 3000.789 kb on - strand at 3001.930 kb on + strand at 3001.930 kb on + strand at 3002.186 kb on + strand, within SGL_RS15835 at 3002.227 kb on + strand, within SGL_RS15835 at 3002.289 kb on + strand, within SGL_RS15835 at 3002.297 kb on - strand, within SGL_RS15835 at 3002.370 kb on - strand, within SGL_RS15835 at 3002.407 kb on - strand, within SGL_RS15835 at 3002.407 kb on - strand, within SGL_RS15835 at 3002.422 kb on - strand, within SGL_RS15835 at 3002.445 kb on + strand, within SGL_RS15835 at 3002.451 kb on - strand, within SGL_RS15835 at 3002.462 kb on - strand, within SGL_RS15835 at 3002.499 kb on + strand, within SGL_RS15835 at 3002.571 kb on - strand, within SGL_RS15835 at 3002.587 kb on - strand, within SGL_RS15835 at 3002.613 kb on - strand, within SGL_RS15835 at 3002.619 kb on - strand, within SGL_RS15835 at 3002.630 kb on + strand, within SGL_RS15835 at 3002.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM remove 3,000,561 + +0.7 3,000,669 - +0.0 3,000,733 + -0.2 3,000,744 + +0.1 3,000,789 - -0.7 3,001,930 + +0.3 3,001,930 + +0.3 3,002,186 + SGL_RS15835 0.15 +0.3 3,002,227 + SGL_RS15835 0.21 +1.3 3,002,289 + SGL_RS15835 0.30 +1.4 3,002,297 - SGL_RS15835 0.31 +0.9 3,002,370 - SGL_RS15835 0.41 +2.1 3,002,407 - SGL_RS15835 0.46 +1.3 3,002,407 - SGL_RS15835 0.46 +1.1 3,002,422 - SGL_RS15835 0.48 +0.8 3,002,445 + SGL_RS15835 0.51 +1.3 3,002,451 - SGL_RS15835 0.52 +1.2 3,002,462 - SGL_RS15835 0.54 +0.6 3,002,499 + SGL_RS15835 0.59 +0.6 3,002,571 - SGL_RS15835 0.69 +0.4 3,002,587 - SGL_RS15835 0.71 +0.9 3,002,613 - SGL_RS15835 0.74 -0.2 3,002,619 - SGL_RS15835 0.75 +0.3 3,002,630 + SGL_RS15835 0.77 +1.0 3,002,735 - +2.3
Or see this region's nucleotide sequence