Experiment: Copper (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15420 and SGL_RS15425 are separated by 130 nucleotides SGL_RS15425 and SGL_RS15430 are separated by 62 nucleotides
SGL_RS15420: SGL_RS15420 - DevA family ABC transporter ATP-binding protein, at 2,911,122 to 2,911,859
_RS15420
SGL_RS15425: SGL_RS15425 - cobalamin biosynthesis protein CobW, at 2,911,990 to 2,913,048
_RS15425
SGL_RS15430: SGL_RS15430 - Ycf66 family protein, at 2,913,111 to 2,914,124
_RS15430
Position (kb)
2911
2912
2913
2914 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2911.146 kb on - strand at 2911.504 kb on + strand, within SGL_RS15420 at 2911.623 kb on + strand, within SGL_RS15420 at 2911.631 kb on - strand, within SGL_RS15420 at 2911.631 kb on - strand, within SGL_RS15420 at 2911.902 kb on - strand at 2912.025 kb on + strand at 2912.092 kb on + strand at 2912.133 kb on - strand, within SGL_RS15425 at 2912.240 kb on - strand, within SGL_RS15425 at 2912.240 kb on - strand, within SGL_RS15425 at 2912.334 kb on + strand, within SGL_RS15425 at 2912.337 kb on - strand, within SGL_RS15425 at 2912.622 kb on - strand, within SGL_RS15425 at 2912.779 kb on + strand, within SGL_RS15425 at 2912.842 kb on + strand, within SGL_RS15425 at 2912.865 kb on + strand, within SGL_RS15425 at 2912.910 kb on + strand, within SGL_RS15425 at 2912.919 kb on - strand, within SGL_RS15425 at 2912.926 kb on - strand, within SGL_RS15425 at 2912.960 kb on - strand at 2912.962 kb on + strand at 2913.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM remove 2,911,146 - +0.7 2,911,504 + SGL_RS15420 0.52 +0.7 2,911,623 + SGL_RS15420 0.68 +0.4 2,911,631 - SGL_RS15420 0.69 +0.2 2,911,631 - SGL_RS15420 0.69 +0.5 2,911,902 - +0.3 2,912,025 + -5.8 2,912,092 + -0.5 2,912,133 - SGL_RS15425 0.14 -5.0 2,912,240 - SGL_RS15425 0.24 -3.9 2,912,240 - SGL_RS15425 0.24 -5.1 2,912,334 + SGL_RS15425 0.32 -4.7 2,912,337 - SGL_RS15425 0.33 -5.2 2,912,622 - SGL_RS15425 0.60 -4.3 2,912,779 + SGL_RS15425 0.75 -5.1 2,912,842 + SGL_RS15425 0.80 -3.8 2,912,865 + SGL_RS15425 0.83 -3.8 2,912,910 + SGL_RS15425 0.87 -4.3 2,912,919 - SGL_RS15425 0.88 -3.4 2,912,926 - SGL_RS15425 0.88 -2.8 2,912,960 - -3.8 2,912,962 + -3.9 2,913,042 + -0.2
Or see this region's nucleotide sequence