Experiment: Copper (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12585 and SGL_RS12590 are separated by 49 nucleotides SGL_RS12590 and SGL_RS12595 are separated by 88 nucleotides SGL_RS12595 and SGL_RS12600 are separated by 13 nucleotides SGL_RS12600 and SGL_RS12605 are separated by 115 nucleotides
SGL_RS12585: SGL_RS12585 - ABC transporter permease subunit, at 2,281,509 to 2,283,182
_RS12585
SGL_RS12590: SGL_RS12590 - low molecular weight protein-tyrosine-phosphatase, at 2,283,232 to 2,283,705
_RS12590
SGL_RS12595: SGL_RS12595 - ROK family protein, at 2,283,794 to 2,284,777
_RS12595
SGL_RS12600: SGL_RS12600 - DUF2062 domain-containing protein, at 2,284,791 to 2,285,294
_RS12600
SGL_RS12605: SGL_RS12605 - NYN domain-containing protein, at 2,285,410 to 2,285,997
_RS12605
Position (kb)
2283
2284
2285 Strain fitness (log2 ratio)
-2
-1
0
1 at 2282.932 kb on - strand, within SGL_RS12585 at 2282.942 kb on - strand, within SGL_RS12585 at 2283.606 kb on + strand, within SGL_RS12590 at 2283.621 kb on + strand, within SGL_RS12590 at 2283.629 kb on - strand, within SGL_RS12590 at 2283.808 kb on + strand at 2283.870 kb on + strand at 2283.994 kb on - strand, within SGL_RS12595 at 2284.018 kb on - strand, within SGL_RS12595 at 2284.089 kb on + strand, within SGL_RS12595 at 2284.281 kb on - strand, within SGL_RS12595 at 2284.324 kb on + strand, within SGL_RS12595 at 2284.422 kb on - strand, within SGL_RS12595 at 2284.570 kb on - strand, within SGL_RS12595 at 2284.845 kb on + strand, within SGL_RS12600 at 2285.104 kb on - strand, within SGL_RS12600 at 2285.178 kb on - strand, within SGL_RS12600 at 2285.279 kb on - strand at 2285.465 kb on - strand at 2285.498 kb on + strand, within SGL_RS12605 at 2285.506 kb on - strand, within SGL_RS12605 at 2285.549 kb on - strand, within SGL_RS12605 at 2285.570 kb on - strand, within SGL_RS12605 at 2285.690 kb on - strand, within SGL_RS12605
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM remove 2,282,932 - SGL_RS12585 0.85 -2.7 2,282,942 - SGL_RS12585 0.86 -2.2 2,283,606 + SGL_RS12590 0.79 +1.4 2,283,621 + SGL_RS12590 0.82 -0.4 2,283,629 - SGL_RS12590 0.84 +0.4 2,283,808 + +0.3 2,283,870 + +0.9 2,283,994 - SGL_RS12595 0.20 -0.6 2,284,018 - SGL_RS12595 0.23 +0.6 2,284,089 + SGL_RS12595 0.30 +0.2 2,284,281 - SGL_RS12595 0.49 +1.2 2,284,324 + SGL_RS12595 0.54 +0.7 2,284,422 - SGL_RS12595 0.64 +0.8 2,284,570 - SGL_RS12595 0.79 +1.1 2,284,845 + SGL_RS12600 0.11 +1.1 2,285,104 - SGL_RS12600 0.62 +0.2 2,285,178 - SGL_RS12600 0.77 +0.8 2,285,279 - +1.3 2,285,465 - -0.3 2,285,498 + SGL_RS12605 0.15 -0.4 2,285,506 - SGL_RS12605 0.16 -0.0 2,285,549 - SGL_RS12605 0.24 -0.5 2,285,570 - SGL_RS12605 0.27 -0.3 2,285,690 - SGL_RS12605 0.48 -0.2
Or see this region's nucleotide sequence