Experiment: Copper (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11305 and SGL_RS11310 are separated by 129 nucleotides SGL_RS11310 and SGL_RS11315 are separated by 84 nucleotides
SGL_RS11305: SGL_RS11305 - carboxylating nicotinate-nucleotide diphosphorylase, at 1,998,460 to 1,999,347
_RS11305
SGL_RS11310: SGL_RS11310 - hypothetical protein, at 1,999,477 to 2,000,730
_RS11310
SGL_RS11315: SGL_RS11315 - Mur ligase family protein, at 2,000,815 to 2,002,194
_RS11315
Position (kb)
1999
2000
2001 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1998.490 kb on + strand at 1998.498 kb on - strand at 1998.508 kb on - strand at 1998.859 kb on + strand, within SGL_RS11305 at 1998.902 kb on + strand, within SGL_RS11305 at 1998.967 kb on + strand, within SGL_RS11305 at 1998.975 kb on - strand, within SGL_RS11305 at 1998.975 kb on - strand, within SGL_RS11305 at 1998.975 kb on - strand, within SGL_RS11305 at 1999.100 kb on + strand, within SGL_RS11305 at 1999.110 kb on - strand, within SGL_RS11305 at 1999.234 kb on + strand, within SGL_RS11305 at 1999.536 kb on + strand at 1999.549 kb on - strand at 1999.650 kb on - strand, within SGL_RS11310 at 1999.720 kb on - strand, within SGL_RS11310 at 1999.744 kb on - strand, within SGL_RS11310 at 1999.855 kb on + strand, within SGL_RS11310 at 2000.102 kb on + strand, within SGL_RS11310 at 2000.102 kb on + strand, within SGL_RS11310 at 2000.102 kb on + strand, within SGL_RS11310 at 2000.210 kb on + strand, within SGL_RS11310 at 2000.218 kb on - strand, within SGL_RS11310 at 2000.321 kb on + strand, within SGL_RS11310 at 2000.321 kb on + strand, within SGL_RS11310 at 2000.379 kb on + strand, within SGL_RS11310 at 2000.403 kb on - strand, within SGL_RS11310 at 2000.405 kb on + strand, within SGL_RS11310 at 2000.472 kb on + strand, within SGL_RS11310 at 2000.733 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM remove 1,998,490 + -1.0 1,998,498 - -0.2 1,998,508 - -0.4 1,998,859 + SGL_RS11305 0.45 -5.1 1,998,902 + SGL_RS11305 0.50 -0.4 1,998,967 + SGL_RS11305 0.57 -2.3 1,998,975 - SGL_RS11305 0.58 -1.8 1,998,975 - SGL_RS11305 0.58 -1.7 1,998,975 - SGL_RS11305 0.58 -2.9 1,999,100 + SGL_RS11305 0.72 -2.2 1,999,110 - SGL_RS11305 0.73 -2.5 1,999,234 + SGL_RS11305 0.87 -2.7 1,999,536 + +0.3 1,999,549 - -0.4 1,999,650 - SGL_RS11310 0.14 -0.6 1,999,720 - SGL_RS11310 0.19 -0.0 1,999,744 - SGL_RS11310 0.21 -0.8 1,999,855 + SGL_RS11310 0.30 -0.8 2,000,102 + SGL_RS11310 0.50 -0.6 2,000,102 + SGL_RS11310 0.50 -0.4 2,000,102 + SGL_RS11310 0.50 +0.8 2,000,210 + SGL_RS11310 0.58 -0.3 2,000,218 - SGL_RS11310 0.59 -0.3 2,000,321 + SGL_RS11310 0.67 -1.1 2,000,321 + SGL_RS11310 0.67 +0.0 2,000,379 + SGL_RS11310 0.72 -0.3 2,000,403 - SGL_RS11310 0.74 -0.6 2,000,405 + SGL_RS11310 0.74 -0.5 2,000,472 + SGL_RS11310 0.79 -0.4 2,000,733 - +0.4
Or see this region's nucleotide sequence