Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10810

Experiment: Copper (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10805 and SGL_RS10810 are separated by 93 nucleotidesSGL_RS10810 and SGL_RS10815 overlap by 23 nucleotidesSGL_RS10815 and SGL_RS10820 are separated by 92 nucleotides SGL_RS10805: SGL_RS10805 - CTP synthase (glutamine hydrolyzing), at 1,890,461 to 1,892,119 _RS10805 SGL_RS10810: SGL_RS10810 - DUF4926 domain-containing protein, at 1,892,213 to 1,892,500 _RS10810 SGL_RS10815: SGL_RS10815 - hypothetical protein, at 1,892,478 to 1,892,825 _RS10815 SGL_RS10820: SGL_RS10820 - sigma 54-interacting transcriptional regulator, at 1,892,918 to 1,895,425 _RS10820 Position (kb) 1892 1893Strain fitness (log2 ratio) -1 0 1at 1892.280 kb on + strand, within SGL_RS10810at 1892.288 kb on - strand, within SGL_RS10810at 1892.451 kb on - strand, within SGL_RS10810at 1892.511 kb on + strandat 1892.530 kb on - strand, within SGL_RS10815at 1892.753 kb on + strand, within SGL_RS10815at 1892.966 kb on + strandat 1892.966 kb on + strandat 1893.045 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM
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1,892,280 + SGL_RS10810 0.23 -1.2
1,892,288 - SGL_RS10810 0.26 -1.2
1,892,451 - SGL_RS10810 0.83 -0.7
1,892,511 + -0.1
1,892,530 - SGL_RS10815 0.15 +0.2
1,892,753 + SGL_RS10815 0.79 +0.2
1,892,966 + +0.0
1,892,966 + -0.2
1,893,045 - +0.1

Or see this region's nucleotide sequence