Experiment: Copper (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07840 and SGL_RS07845 are separated by 125 nucleotides SGL_RS07845 and SGL_RS07850 are separated by 49 nucleotides SGL_RS07850 and SGL_RS07855 are separated by 251 nucleotides
SGL_RS07840: SGL_RS07840 - SDR family NAD(P)-dependent oxidoreductase, at 1,276,236 to 1,276,982
_RS07840
SGL_RS07845: SGL_RS07845 - DUF427 domain-containing protein, at 1,277,108 to 1,277,392
_RS07845
SGL_RS07850: SGL_RS07850 - response regulator transcription factor, at 1,277,442 to 1,278,074
_RS07850
SGL_RS07855: SGL_RS07855 - MASE1 domain-containing protein, at 1,278,326 to 1,280,542
_RS07855
Position (kb)
1277
1278
1279 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1276.602 kb on + strand, within SGL_RS07840 at 1276.609 kb on + strand, within SGL_RS07840 at 1276.619 kb on + strand, within SGL_RS07840 at 1276.627 kb on - strand, within SGL_RS07840 at 1276.801 kb on + strand, within SGL_RS07840 at 1276.934 kb on + strand at 1276.936 kb on - strand at 1276.942 kb on - strand at 1277.127 kb on - strand at 1277.168 kb on + strand, within SGL_RS07845 at 1277.169 kb on + strand, within SGL_RS07845 at 1277.181 kb on + strand, within SGL_RS07845 at 1277.189 kb on - strand, within SGL_RS07845 at 1277.189 kb on - strand, within SGL_RS07845 at 1277.345 kb on - strand, within SGL_RS07845 at 1277.401 kb on - strand at 1277.402 kb on - strand at 1277.421 kb on + strand at 1277.422 kb on + strand at 1277.710 kb on - strand, within SGL_RS07850 at 1277.721 kb on - strand, within SGL_RS07850 at 1277.750 kb on + strand, within SGL_RS07850 at 1277.759 kb on - strand, within SGL_RS07850 at 1277.801 kb on - strand, within SGL_RS07850 at 1277.930 kb on + strand, within SGL_RS07850 at 1278.020 kb on - strand at 1278.348 kb on - strand at 1278.398 kb on + strand at 1278.399 kb on + strand at 1278.407 kb on - strand at 1278.407 kb on - strand at 1278.414 kb on - strand at 1278.416 kb on + strand at 1278.416 kb on + strand at 1278.416 kb on + strand at 1278.416 kb on + strand at 1278.424 kb on - strand at 1278.477 kb on + strand at 1278.519 kb on + strand at 1278.552 kb on - strand, within SGL_RS07855 at 1278.611 kb on - strand, within SGL_RS07855 at 1278.618 kb on - strand, within SGL_RS07855 at 1278.782 kb on + strand, within SGL_RS07855 at 1278.792 kb on + strand, within SGL_RS07855 at 1278.865 kb on + strand, within SGL_RS07855 at 1278.987 kb on + strand, within SGL_RS07855
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM remove 1,276,602 + SGL_RS07840 0.49 -0.6 1,276,609 + SGL_RS07840 0.50 -3.7 1,276,619 + SGL_RS07840 0.51 -3.6 1,276,627 - SGL_RS07840 0.52 -2.8 1,276,801 + SGL_RS07840 0.76 -3.9 1,276,934 + -1.2 1,276,936 - -1.6 1,276,942 - -1.6 1,277,127 - -0.2 1,277,168 + SGL_RS07845 0.21 -0.3 1,277,169 + SGL_RS07845 0.21 -0.3 1,277,181 + SGL_RS07845 0.26 -0.1 1,277,189 - SGL_RS07845 0.28 -0.0 1,277,189 - SGL_RS07845 0.28 +0.2 1,277,345 - SGL_RS07845 0.83 -0.3 1,277,401 - -1.5 1,277,402 - +0.1 1,277,421 + -0.1 1,277,422 + -1.1 1,277,710 - SGL_RS07850 0.42 +0.9 1,277,721 - SGL_RS07850 0.44 +0.8 1,277,750 + SGL_RS07850 0.49 +0.7 1,277,759 - SGL_RS07850 0.50 +1.3 1,277,801 - SGL_RS07850 0.57 +1.4 1,277,930 + SGL_RS07850 0.77 +0.8 1,278,020 - +0.9 1,278,348 - +1.3 1,278,398 + +1.4 1,278,399 + +1.2 1,278,407 - +1.6 1,278,407 - +0.9 1,278,414 - +1.4 1,278,416 + +1.2 1,278,416 + +1.2 1,278,416 + +1.1 1,278,416 + +2.0 1,278,424 - +1.6 1,278,477 + +1.9 1,278,519 + +1.4 1,278,552 - SGL_RS07855 0.10 +1.6 1,278,611 - SGL_RS07855 0.13 +1.7 1,278,618 - SGL_RS07855 0.13 +1.9 1,278,782 + SGL_RS07855 0.21 +1.5 1,278,792 + SGL_RS07855 0.21 +1.7 1,278,865 + SGL_RS07855 0.24 +1.7 1,278,987 + SGL_RS07855 0.30 +1.6
Or see this region's nucleotide sequence