Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03630

Experiment: Copper (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03625 and SGL_RS03630 are separated by 238 nucleotidesSGL_RS03630 and SGL_RS03635 are separated by 65 nucleotides SGL_RS03625: SGL_RS03625 - glycosyltransferase family 1 protein, at 367,807 to 368,910 _RS03625 SGL_RS03630: SGL_RS03630 - glycosyltransferase family 2 protein, at 369,149 to 370,219 _RS03630 SGL_RS03635: SGL_RS03635 - glycosyltransferase family 4 protein, at 370,285 to 371,490 _RS03635 Position (kb) 369 370 371Strain fitness (log2 ratio) -11 -10 -9 -8 -7 -6 -5 -4 -3 -2 -1 0 1at 368.195 kb on - strand, within SGL_RS03625at 368.252 kb on + strand, within SGL_RS03625at 368.606 kb on - strand, within SGL_RS03625at 369.217 kb on + strandat 369.217 kb on + strandat 369.217 kb on + strandat 369.217 kb on + strandat 369.217 kb on + strandat 369.225 kb on - strandat 369.225 kb on - strandat 369.225 kb on - strandat 369.225 kb on - strandat 369.225 kb on - strandat 369.225 kb on - strandat 369.745 kb on - strand, within SGL_RS03630at 369.786 kb on + strand, within SGL_RS03630at 369.837 kb on + strand, within SGL_RS03630at 369.907 kb on + strand, within SGL_RS03630at 370.116 kb on + strandat 370.627 kb on - strand, within SGL_RS03635at 370.984 kb on - strand, within SGL_RS03635

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Per-strain Table

Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM
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368,195 - SGL_RS03625 0.35 -4.1
368,252 + SGL_RS03625 0.40 -11.2
368,606 - SGL_RS03625 0.72 -6.3
369,217 + -3.9
369,217 + -3.4
369,217 + -3.8
369,217 + -4.6
369,217 + -4.3
369,225 - -6.3
369,225 - -4.4
369,225 - -3.0
369,225 - -4.5
369,225 - -3.6
369,225 - -1.9
369,745 - SGL_RS03630 0.56 -4.3
369,786 + SGL_RS03630 0.59 -3.0
369,837 + SGL_RS03630 0.64 -4.2
369,907 + SGL_RS03630 0.71 -3.9
370,116 + -6.5
370,627 - SGL_RS03635 0.28 -4.1
370,984 - SGL_RS03635 0.58 -4.5

Or see this region's nucleotide sequence