Experiment: Copper (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02450 and SGL_RS02455 overlap by 20 nucleotides SGL_RS02455 and SGL_RS02460 are separated by 76 nucleotides SGL_RS02460 and SGL_RS02465 are separated by 161 nucleotides SGL_RS02465 and SGL_RS02470 are separated by 75 nucleotides
SGL_RS02450: SGL_RS02450 - hypothetical protein, at 129,791 to 130,186
_RS02450
SGL_RS02455: SGL_RS02455 - CPBP family intramembrane metalloprotease, at 130,167 to 131,039
_RS02455
SGL_RS02460: SGL_RS02460 - phosphate signaling complex protein PhoU, at 131,116 to 131,790
_RS02460
SGL_RS02465: SGL_RS02465 - ribosome maturation factor RimP, at 131,952 to 132,407
_RS02465
SGL_RS02470: SGL_RS02470 - transcription termination factor NusA, at 132,483 to 133,859
_RS02470
Position (kb) 131
132 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 130.130 kb on - strand, within SGL_RS02450 at 130.136 kb on - strand, within SGL_RS02450 at 131.057 kb on + strand at 131.067 kb on + strand at 131.165 kb on - strand at 131.173 kb on + strand at 131.181 kb on - strand at 131.196 kb on - strand, within SGL_RS02460 at 131.388 kb on + strand, within SGL_RS02460 at 131.639 kb on + strand, within SGL_RS02460 at 131.645 kb on - strand, within SGL_RS02460 at 131.646 kb on - strand, within SGL_RS02460 at 131.785 kb on + strand at 131.844 kb on + strand at 132.380 kb on + strand at 132.382 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM remove 130,130 - SGL_RS02450 0.86 +0.2 130,136 - SGL_RS02450 0.87 +0.2 131,057 + -0.3 131,067 + -0.5 131,165 - -5.9 131,173 + -5.3 131,181 - -5.8 131,196 - SGL_RS02460 0.12 -5.4 131,388 + SGL_RS02460 0.40 -3.2 131,639 + SGL_RS02460 0.77 -4.1 131,645 - SGL_RS02460 0.78 -4.5 131,646 - SGL_RS02460 0.79 -4.8 131,785 + +0.3 131,844 + -5.3 132,380 + -2.4 132,382 + -2.9
Or see this region's nucleotide sequence