Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02270

Experiment: Copper (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02265 and SGL_RS02270 are separated by 230 nucleotidesSGL_RS02270 and SGL_RS02275 are separated by 105 nucleotides SGL_RS02265: SGL_RS02265 - transglutaminase family protein, at 88,818 to 90,506 _RS02265 SGL_RS02270: SGL_RS02270 - hypothetical protein, at 90,737 to 91,411 _RS02270 SGL_RS02275: SGL_RS02275 - SPFH domain-containing protein, at 91,517 to 92,482 _RS02275 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1at 89.758 kb on - strand, within SGL_RS02265at 89.760 kb on - strand, within SGL_RS02265at 89.793 kb on + strand, within SGL_RS02265at 89.796 kb on - strand, within SGL_RS02265at 89.800 kb on - strand, within SGL_RS02265at 89.861 kb on - strand, within SGL_RS02265at 89.861 kb on - strand, within SGL_RS02265at 89.955 kb on - strand, within SGL_RS02265at 90.013 kb on - strand, within SGL_RS02265at 90.013 kb on - strand, within SGL_RS02265at 90.115 kb on + strand, within SGL_RS02265at 90.144 kb on + strand, within SGL_RS02265at 90.144 kb on + strand, within SGL_RS02265at 90.144 kb on + strand, within SGL_RS02265at 90.144 kb on + strand, within SGL_RS02265at 90.144 kb on + strand, within SGL_RS02265at 90.144 kb on + strand, within SGL_RS02265at 90.248 kb on - strand, within SGL_RS02265at 90.262 kb on - strand, within SGL_RS02265at 90.273 kb on - strand, within SGL_RS02265at 90.275 kb on + strand, within SGL_RS02265at 90.341 kb on - strandat 90.390 kb on + strandat 90.405 kb on - strandat 90.440 kb on - strandat 90.445 kb on - strandat 90.537 kb on + strandat 90.552 kb on - strandat 90.601 kb on + strandat 90.639 kb on - strandat 90.799 kb on + strandat 90.860 kb on + strand, within SGL_RS02270at 90.895 kb on + strand, within SGL_RS02270at 90.899 kb on - strand, within SGL_RS02270at 90.920 kb on + strand, within SGL_RS02270at 91.053 kb on - strand, within SGL_RS02270at 91.055 kb on - strand, within SGL_RS02270at 91.112 kb on + strand, within SGL_RS02270at 91.137 kb on + strand, within SGL_RS02270at 91.166 kb on - strand, within SGL_RS02270at 91.224 kb on - strand, within SGL_RS02270at 91.266 kb on + strand, within SGL_RS02270at 91.266 kb on + strand, within SGL_RS02270at 91.279 kb on - strand, within SGL_RS02270at 91.293 kb on + strand, within SGL_RS02270at 91.371 kb on - strandat 91.615 kb on + strand, within SGL_RS02275at 91.646 kb on + strand, within SGL_RS02275at 91.968 kb on - strand, within SGL_RS02275at 91.998 kb on + strand, within SGL_RS02275at 92.016 kb on - strand, within SGL_RS02275at 92.069 kb on + strand, within SGL_RS02275at 92.354 kb on + strand, within SGL_RS02275at 92.408 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM
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89,758 - SGL_RS02265 0.56 -2.1
89,760 - SGL_RS02265 0.56 -0.8
89,793 + SGL_RS02265 0.58 -0.3
89,796 - SGL_RS02265 0.58 +0.1
89,800 - SGL_RS02265 0.58 -0.3
89,861 - SGL_RS02265 0.62 -0.6
89,861 - SGL_RS02265 0.62 +0.2
89,955 - SGL_RS02265 0.67 -0.7
90,013 - SGL_RS02265 0.71 -0.2
90,013 - SGL_RS02265 0.71 -0.1
90,115 + SGL_RS02265 0.77 -0.8
90,144 + SGL_RS02265 0.79 -0.7
90,144 + SGL_RS02265 0.79 -2.1
90,144 + SGL_RS02265 0.79 -0.4
90,144 + SGL_RS02265 0.79 -0.5
90,144 + SGL_RS02265 0.79 -0.4
90,144 + SGL_RS02265 0.79 +1.1
90,248 - SGL_RS02265 0.85 -0.6
90,262 - SGL_RS02265 0.85 -0.0
90,273 - SGL_RS02265 0.86 -0.3
90,275 + SGL_RS02265 0.86 -0.5
90,341 - -0.5
90,390 + -0.6
90,405 - -0.2
90,440 - -0.4
90,445 - +0.1
90,537 + -0.3
90,552 - -0.5
90,601 + -0.3
90,639 - -0.5
90,799 + -0.5
90,860 + SGL_RS02270 0.18 -0.3
90,895 + SGL_RS02270 0.23 -0.0
90,899 - SGL_RS02270 0.24 -0.2
90,920 + SGL_RS02270 0.27 -0.1
91,053 - SGL_RS02270 0.47 +0.2
91,055 - SGL_RS02270 0.47 -0.4
91,112 + SGL_RS02270 0.56 +0.3
91,137 + SGL_RS02270 0.59 -0.8
91,166 - SGL_RS02270 0.64 -0.6
91,224 - SGL_RS02270 0.72 -1.4
91,266 + SGL_RS02270 0.78 -0.9
91,266 + SGL_RS02270 0.78 -0.2
91,279 - SGL_RS02270 0.80 -0.5
91,293 + SGL_RS02270 0.82 -0.6
91,371 - -0.4
91,615 + SGL_RS02275 0.10 -0.2
91,646 + SGL_RS02275 0.13 -2.1
91,968 - SGL_RS02275 0.47 -0.6
91,998 + SGL_RS02275 0.50 -0.4
92,016 - SGL_RS02275 0.52 -0.5
92,069 + SGL_RS02275 0.57 +0.2
92,354 + SGL_RS02275 0.87 +0.3
92,408 + -0.8

Or see this region's nucleotide sequence