Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02150

Experiment: Copper (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02145 and SGL_RS02150 are separated by 72 nucleotidesSGL_RS02150 and SGL_RS02155 are separated by 38 nucleotidesSGL_RS02155 and SGL_RS02160 are separated by 224 nucleotides SGL_RS02145: SGL_RS02145 - metallophosphoesterase, at 65,827 to 67,533 _RS02145 SGL_RS02150: SGL_RS02150 - WecB/TagA/CpsF family glycosyltransferase, at 67,606 to 68,361 _RS02150 SGL_RS02155: SGL_RS02155 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 68,400 to 69,059 _RS02155 SGL_RS02160: SGL_RS02160 - GDSL-type esterase/lipase family protein, at 69,284 to 69,985 _RS02160 Position (kb) 67 68 69Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 66.671 kb on - strand, within SGL_RS02145at 66.752 kb on - strand, within SGL_RS02145at 66.757 kb on - strand, within SGL_RS02145at 66.785 kb on + strand, within SGL_RS02145at 66.785 kb on + strand, within SGL_RS02145at 66.829 kb on - strand, within SGL_RS02145at 66.835 kb on + strand, within SGL_RS02145at 66.877 kb on - strand, within SGL_RS02145at 66.972 kb on - strand, within SGL_RS02145at 66.999 kb on + strand, within SGL_RS02145at 67.043 kb on - strand, within SGL_RS02145at 67.087 kb on - strand, within SGL_RS02145at 67.163 kb on - strand, within SGL_RS02145at 67.166 kb on + strand, within SGL_RS02145at 67.200 kb on - strand, within SGL_RS02145at 67.260 kb on - strand, within SGL_RS02145at 67.322 kb on + strand, within SGL_RS02145at 67.330 kb on - strand, within SGL_RS02145at 67.330 kb on - strand, within SGL_RS02145at 67.330 kb on - strand, within SGL_RS02145at 67.399 kb on + strandat 67.399 kb on + strandat 67.406 kb on + strandat 67.463 kb on - strandat 67.657 kb on + strandat 67.660 kb on - strandat 67.786 kb on + strand, within SGL_RS02150at 67.794 kb on - strand, within SGL_RS02150at 67.823 kb on + strand, within SGL_RS02150at 67.838 kb on + strand, within SGL_RS02150at 67.850 kb on + strand, within SGL_RS02150at 68.167 kb on + strand, within SGL_RS02150at 68.528 kb on + strand, within SGL_RS02155at 68.600 kb on + strand, within SGL_RS02155at 68.720 kb on - strand, within SGL_RS02155at 68.790 kb on - strand, within SGL_RS02155at 68.879 kb on - strand, within SGL_RS02155at 68.975 kb on - strand, within SGL_RS02155at 68.988 kb on - strand, within SGL_RS02155at 69.173 kb on + strandat 69.355 kb on - strand, within SGL_RS02160

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Per-strain Table

Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM
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66,671 - SGL_RS02145 0.49 -4.3
66,752 - SGL_RS02145 0.54 -2.7
66,757 - SGL_RS02145 0.54 -2.8
66,785 + SGL_RS02145 0.56 -2.9
66,785 + SGL_RS02145 0.56 -5.1
66,829 - SGL_RS02145 0.59 -3.9
66,835 + SGL_RS02145 0.59 -3.4
66,877 - SGL_RS02145 0.62 -3.4
66,972 - SGL_RS02145 0.67 -2.6
66,999 + SGL_RS02145 0.69 -3.7
67,043 - SGL_RS02145 0.71 -2.7
67,087 - SGL_RS02145 0.74 -5.5
67,163 - SGL_RS02145 0.78 -2.9
67,166 + SGL_RS02145 0.78 -2.4
67,200 - SGL_RS02145 0.80 -1.9
67,260 - SGL_RS02145 0.84 -1.9
67,322 + SGL_RS02145 0.88 -3.2
67,330 - SGL_RS02145 0.88 -5.5
67,330 - SGL_RS02145 0.88 -4.2
67,330 - SGL_RS02145 0.88 -4.2
67,399 + -3.0
67,399 + -1.4
67,406 + -2.5
67,463 - -3.5
67,657 + +1.8
67,660 - +2.4
67,786 + SGL_RS02150 0.24 +1.6
67,794 - SGL_RS02150 0.25 +1.7
67,823 + SGL_RS02150 0.29 +1.6
67,838 + SGL_RS02150 0.31 +1.7
67,850 + SGL_RS02150 0.32 +1.8
68,167 + SGL_RS02150 0.74 +1.7
68,528 + SGL_RS02155 0.19 +0.8
68,600 + SGL_RS02155 0.30 +0.4
68,720 - SGL_RS02155 0.48 +0.7
68,790 - SGL_RS02155 0.59 +0.8
68,879 - SGL_RS02155 0.73 +0.2
68,975 - SGL_RS02155 0.87 +1.6
68,988 - SGL_RS02155 0.89 +0.4
69,173 + +0.4
69,355 - SGL_RS02160 0.10 +0.4

Or see this region's nucleotide sequence