Experiment: Copper (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS01835 and SGL_RS01840 overlap by 4 nucleotides SGL_RS01840 and SGL_RS01845 are separated by 346 nucleotides SGL_RS01845 and SGL_RS01850 are separated by 37 nucleotides
SGL_RS01835: SGL_RS01835 - type I restriction endonuclease subunit R, at 94,722 to 97,901
_RS01835
SGL_RS01840: SGL_RS01840 - SprT family zinc-dependent metalloprotease, at 97,898 to 98,596
_RS01840
SGL_RS01845: SGL_RS01845 - hypothetical protein, at 98,943 to 99,497
_RS01845
SGL_RS01850: SGL_RS01850 - IS4-like element IS4Sa family transposase, at 99,535 to 100,551
_RS01850
Position (kb) 97
98
99 Strain fitness (log2 ratio) -1
0
1 at 96.976 kb on - strand, within SGL_RS01835 at 97.264 kb on - strand, within SGL_RS01835 at 97.286 kb on - strand, within SGL_RS01835 at 97.517 kb on + strand, within SGL_RS01835 at 97.686 kb on + strand at 97.944 kb on + strand at 97.969 kb on - strand, within SGL_RS01840 at 98.246 kb on + strand, within SGL_RS01840 at 98.288 kb on - strand, within SGL_RS01840 at 98.557 kb on + strand at 98.623 kb on + strand at 98.623 kb on + strand at 98.892 kb on + strand at 99.130 kb on + strand, within SGL_RS01845 at 99.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM remove 96,976 - SGL_RS01835 0.71 +0.6 97,264 - SGL_RS01835 0.80 -1.2 97,286 - SGL_RS01835 0.81 -0.7 97,517 + SGL_RS01835 0.88 -0.2 97,686 + +0.5 97,944 + +0.1 97,969 - SGL_RS01840 0.10 +0.8 98,246 + SGL_RS01840 0.50 +0.0 98,288 - SGL_RS01840 0.56 -0.1 98,557 + +0.0 98,623 + +0.3 98,623 + +0.5 98,892 + +0.6 99,130 + SGL_RS01845 0.34 +0.4 99,448 - +0.5
Or see this region's nucleotide sequence