Experiment: Copper (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS01825 and SGL_RS01830 are separated by 140 nucleotides SGL_RS01830 and SGL_RS01835 are separated by 21 nucleotides SGL_RS01835 and SGL_RS01840 overlap by 4 nucleotides
SGL_RS01825: SGL_RS01825 - type II toxin-antitoxin system HigB family toxin, at 93,820 to 94,140
_RS01825
SGL_RS01830: SGL_RS01830 - transcriptional regulator, at 94,281 to 94,700
_RS01830
SGL_RS01835: SGL_RS01835 - type I restriction endonuclease subunit R, at 94,722 to 97,901
_RS01835
SGL_RS01840: SGL_RS01840 - SprT family zinc-dependent metalloprotease, at 97,898 to 98,596
_RS01840
Position (kb) 94
95
96
97
98 Strain fitness (log2 ratio) -2
-1
0
1 at 93.828 kb on - strand at 93.849 kb on - strand at 93.951 kb on - strand, within SGL_RS01825 at 94.626 kb on - strand, within SGL_RS01830 at 94.797 kb on + strand at 94.831 kb on + strand at 94.839 kb on - strand at 94.858 kb on + strand at 94.896 kb on + strand at 94.906 kb on + strand at 94.931 kb on + strand at 95.031 kb on - strand at 95.034 kb on + strand at 95.217 kb on + strand, within SGL_RS01835 at 95.239 kb on - strand, within SGL_RS01835 at 95.305 kb on + strand, within SGL_RS01835 at 95.384 kb on + strand, within SGL_RS01835 at 95.455 kb on - strand, within SGL_RS01835 at 95.519 kb on + strand, within SGL_RS01835 at 95.519 kb on + strand, within SGL_RS01835 at 95.560 kb on - strand, within SGL_RS01835 at 95.564 kb on + strand, within SGL_RS01835 at 95.603 kb on - strand, within SGL_RS01835 at 95.605 kb on + strand, within SGL_RS01835 at 95.610 kb on + strand, within SGL_RS01835 at 95.610 kb on + strand, within SGL_RS01835 at 95.610 kb on + strand, within SGL_RS01835 at 95.616 kb on - strand, within SGL_RS01835 at 95.642 kb on - strand, within SGL_RS01835 at 95.672 kb on + strand, within SGL_RS01835 at 95.680 kb on - strand, within SGL_RS01835 at 95.739 kb on + strand, within SGL_RS01835 at 95.861 kb on - strand, within SGL_RS01835 at 95.909 kb on + strand, within SGL_RS01835 at 95.925 kb on + strand, within SGL_RS01835 at 96.063 kb on - strand, within SGL_RS01835 at 96.071 kb on - strand, within SGL_RS01835 at 96.216 kb on + strand, within SGL_RS01835 at 96.237 kb on + strand, within SGL_RS01835 at 96.238 kb on + strand, within SGL_RS01835 at 96.622 kb on - strand, within SGL_RS01835 at 96.637 kb on - strand, within SGL_RS01835 at 96.700 kb on - strand, within SGL_RS01835 at 96.711 kb on + strand, within SGL_RS01835 at 96.719 kb on - strand, within SGL_RS01835 at 96.976 kb on - strand, within SGL_RS01835 at 97.264 kb on - strand, within SGL_RS01835 at 97.286 kb on - strand, within SGL_RS01835 at 97.517 kb on + strand, within SGL_RS01835 at 97.686 kb on + strand at 97.944 kb on + strand at 97.969 kb on - strand, within SGL_RS01840 at 98.246 kb on + strand, within SGL_RS01840 at 98.288 kb on - strand, within SGL_RS01840 at 98.557 kb on + strand at 98.623 kb on + strand at 98.623 kb on + strand at 98.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM remove 93,828 - -0.4 93,849 - +0.6 93,951 - SGL_RS01825 0.41 +0.4 94,626 - SGL_RS01830 0.82 +1.6 94,797 + +0.4 94,831 + +0.9 94,839 - +0.4 94,858 + +0.1 94,896 + +0.3 94,906 + -0.0 94,931 + +0.9 95,031 - +0.1 95,034 + +0.1 95,217 + SGL_RS01835 0.16 -0.2 95,239 - SGL_RS01835 0.16 +1.5 95,305 + SGL_RS01835 0.18 +0.1 95,384 + SGL_RS01835 0.21 +0.1 95,455 - SGL_RS01835 0.23 +0.6 95,519 + SGL_RS01835 0.25 +0.9 95,519 + SGL_RS01835 0.25 -0.0 95,560 - SGL_RS01835 0.26 +0.3 95,564 + SGL_RS01835 0.26 +0.2 95,603 - SGL_RS01835 0.28 -0.4 95,605 + SGL_RS01835 0.28 +0.2 95,610 + SGL_RS01835 0.28 +0.7 95,610 + SGL_RS01835 0.28 +0.8 95,610 + SGL_RS01835 0.28 -2.2 95,616 - SGL_RS01835 0.28 +0.4 95,642 - SGL_RS01835 0.29 +0.4 95,672 + SGL_RS01835 0.30 -0.2 95,680 - SGL_RS01835 0.30 -0.1 95,739 + SGL_RS01835 0.32 +1.4 95,861 - SGL_RS01835 0.36 +1.0 95,909 + SGL_RS01835 0.37 +0.3 95,925 + SGL_RS01835 0.38 -0.6 96,063 - SGL_RS01835 0.42 -1.1 96,071 - SGL_RS01835 0.42 +0.7 96,216 + SGL_RS01835 0.47 +0.8 96,237 + SGL_RS01835 0.48 +0.3 96,238 + SGL_RS01835 0.48 -0.3 96,622 - SGL_RS01835 0.60 +1.1 96,637 - SGL_RS01835 0.60 -0.3 96,700 - SGL_RS01835 0.62 +0.5 96,711 + SGL_RS01835 0.63 +0.2 96,719 - SGL_RS01835 0.63 +0.1 96,976 - SGL_RS01835 0.71 +0.6 97,264 - SGL_RS01835 0.80 -1.2 97,286 - SGL_RS01835 0.81 -0.7 97,517 + SGL_RS01835 0.88 -0.2 97,686 + +0.5 97,944 + +0.1 97,969 - SGL_RS01840 0.10 +0.8 98,246 + SGL_RS01840 0.50 +0.0 98,288 - SGL_RS01840 0.56 -0.1 98,557 + +0.0 98,623 + +0.3 98,623 + +0.5 98,892 + +0.6
Or see this region's nucleotide sequence