Experiment: Copper (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18575 and SGL_RS01355 are separated by 299 nucleotides SGL_RS01355 and SGL_RS01360 overlap by 11 nucleotides
SGL_RS18575: SGL_RS18575 - IS630 family transposase, at 41,056 to 41,903
_RS18575
SGL_RS01355: SGL_RS01355 - SprT family zinc-dependent metalloprotease, at 42,203 to 42,913
_RS01355
SGL_RS01360: SGL_RS01360 - hypothetical protein, at 42,903 to 43,241
_RS01360
Position (kb) 42
43 Strain fitness (log2 ratio) -1
0
1 at 42.067 kb on + strand at 42.085 kb on - strand at 42.090 kb on - strand at 42.206 kb on + strand at 42.206 kb on + strand at 42.206 kb on + strand at 42.211 kb on + strand at 42.214 kb on - strand at 42.214 kb on - strand at 42.261 kb on - strand at 42.300 kb on - strand, within SGL_RS01355 at 42.337 kb on - strand, within SGL_RS01355 at 42.390 kb on + strand, within SGL_RS01355 at 42.465 kb on + strand, within SGL_RS01355 at 42.656 kb on - strand, within SGL_RS01355 at 42.712 kb on - strand, within SGL_RS01355 at 42.726 kb on + strand, within SGL_RS01355 at 42.768 kb on + strand, within SGL_RS01355 at 42.768 kb on + strand, within SGL_RS01355 at 42.768 kb on + strand, within SGL_RS01355 at 42.776 kb on - strand, within SGL_RS01355 at 42.782 kb on - strand, within SGL_RS01355 at 42.790 kb on - strand, within SGL_RS01355 at 42.877 kb on - strand at 42.912 kb on + strand at 42.946 kb on + strand, within SGL_RS01360 at 42.980 kb on - strand, within SGL_RS01360 at 43.079 kb on + strand, within SGL_RS01360 at 43.079 kb on + strand, within SGL_RS01360 at 43.079 kb on + strand, within SGL_RS01360 at 43.079 kb on + strand, within SGL_RS01360 at 43.192 kb on + strand, within SGL_RS01360 at 43.234 kb on - strand at 43.327 kb on - strand at 43.367 kb on - strand at 43.374 kb on + strand at 43.383 kb on + strand at 43.391 kb on - strand at 43.428 kb on - strand at 43.428 kb on - strand at 43.428 kb on - strand at 43.428 kb on - strand at 43.433 kb on - strand at 43.586 kb on + strand at 43.609 kb on + strand at 43.623 kb on + strand at 43.655 kb on + strand at 43.737 kb on + strand at 43.745 kb on - strand at 43.745 kb on - strand at 43.837 kb on - strand at 43.837 kb on - strand at 43.880 kb on + strand at 43.886 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM remove 42,067 + +0.1 42,085 - +1.0 42,090 - -0.2 42,206 + +0.3 42,206 + -0.7 42,206 + -0.2 42,211 + +0.0 42,214 - +0.3 42,214 - +0.7 42,261 - +0.3 42,300 - SGL_RS01355 0.14 +0.1 42,337 - SGL_RS01355 0.19 -0.0 42,390 + SGL_RS01355 0.26 +1.5 42,465 + SGL_RS01355 0.37 -0.7 42,656 - SGL_RS01355 0.64 +0.1 42,712 - SGL_RS01355 0.72 +0.1 42,726 + SGL_RS01355 0.74 -0.2 42,768 + SGL_RS01355 0.79 +1.0 42,768 + SGL_RS01355 0.79 -0.3 42,768 + SGL_RS01355 0.79 +0.1 42,776 - SGL_RS01355 0.81 +0.0 42,782 - SGL_RS01355 0.81 +0.5 42,790 - SGL_RS01355 0.83 +1.7 42,877 - -0.2 42,912 + +0.8 42,946 + SGL_RS01360 0.13 -0.5 42,980 - SGL_RS01360 0.23 -1.0 43,079 + SGL_RS01360 0.52 -0.6 43,079 + SGL_RS01360 0.52 +0.2 43,079 + SGL_RS01360 0.52 -0.1 43,079 + SGL_RS01360 0.52 +0.1 43,192 + SGL_RS01360 0.85 +0.5 43,234 - +0.3 43,327 - -0.2 43,367 - -0.2 43,374 + +0.8 43,383 + -0.0 43,391 - -0.0 43,428 - +0.0 43,428 - -0.1 43,428 - -0.4 43,428 - -0.5 43,433 - -0.3 43,586 + -1.7 43,609 + -0.4 43,623 + -1.3 43,655 + +0.6 43,737 + -0.7 43,745 - -0.1 43,745 - +0.6 43,837 - +0.6 43,837 - -0.0 43,880 + +0.6 43,886 + +0.2
Or see this region's nucleotide sequence