Experiment: Copper (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS00245 and SGL_RS00250 are separated by 92 nucleotides SGL_RS00250 and SGL_RS00255 are separated by 0 nucleotides SGL_RS00255 and SGL_RS19680 are separated by 75 nucleotides SGL_RS19680 and SGL_RS00260 are separated by 236 nucleotides
SGL_RS00245: SGL_RS00245 - glycosyltransferase, at 53,037 to 54,026
_RS00245
SGL_RS00250: SGL_RS00250 - WecB/TagA/CpsF family glycosyltransferase, at 54,119 to 54,910
_RS00250
SGL_RS00255: SGL_RS00255 - glycosyltransferase family 2 protein, at 54,911 to 56,281
_RS00255
SGL_RS19680: SGL_RS19680 - IS1 family transposase, at 56,357 to 56,617
_RS19680
SGL_RS00260: SGL_RS00260 - sugar transferase, at 56,854 to 57,807
_RS00260
Position (kb) 54
55
56
57 Strain fitness (log2 ratio) -1
0
1
2
3 at 53.971 kb on + strand at 54.068 kb on - strand at 54.209 kb on - strand, within SGL_RS00250 at 54.608 kb on - strand, within SGL_RS00250 at 54.608 kb on - strand, within SGL_RS00250 at 54.638 kb on - strand, within SGL_RS00250 at 54.686 kb on + strand, within SGL_RS00250 at 54.859 kb on + strand at 54.859 kb on + strand at 54.868 kb on + strand at 54.888 kb on - strand at 54.905 kb on + strand at 54.929 kb on + strand at 54.956 kb on + strand at 54.966 kb on + strand at 54.966 kb on + strand at 54.966 kb on + strand at 54.974 kb on - strand at 55.129 kb on + strand, within SGL_RS00255 at 55.225 kb on - strand, within SGL_RS00255 at 55.241 kb on + strand, within SGL_RS00255 at 55.249 kb on - strand, within SGL_RS00255 at 55.359 kb on + strand, within SGL_RS00255 at 55.414 kb on + strand, within SGL_RS00255 at 55.414 kb on + strand, within SGL_RS00255 at 55.432 kb on - strand, within SGL_RS00255 at 55.544 kb on + strand, within SGL_RS00255 at 55.558 kb on + strand, within SGL_RS00255 at 55.691 kb on + strand, within SGL_RS00255 at 55.721 kb on + strand, within SGL_RS00255 at 55.732 kb on + strand, within SGL_RS00255 at 55.795 kb on + strand, within SGL_RS00255 at 55.835 kb on + strand, within SGL_RS00255 at 55.843 kb on - strand, within SGL_RS00255 at 55.843 kb on - strand, within SGL_RS00255 at 55.845 kb on + strand, within SGL_RS00255 at 55.845 kb on + strand, within SGL_RS00255 at 55.853 kb on - strand, within SGL_RS00255 at 55.853 kb on - strand, within SGL_RS00255 at 56.090 kb on - strand, within SGL_RS00255 at 56.149 kb on - strand at 56.161 kb on + strand at 56.161 kb on + strand at 56.379 kb on + strand at 56.387 kb on - strand, within SGL_RS19680 at 56.557 kb on + strand, within SGL_RS19680 at 56.576 kb on - strand, within SGL_RS19680 at 56.645 kb on + strand at 56.653 kb on - strand at 56.775 kb on + strand at 56.804 kb on - strand at 57.000 kb on - strand, within SGL_RS00260 at 57.046 kb on - strand, within SGL_RS00260 at 57.058 kb on + strand, within SGL_RS00260 at 57.125 kb on + strand, within SGL_RS00260 at 57.236 kb on + strand, within SGL_RS00260
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 5 uM remove 53,971 + -0.6 54,068 - -0.1 54,209 - SGL_RS00250 0.11 -0.7 54,608 - SGL_RS00250 0.62 -0.5 54,608 - SGL_RS00250 0.62 -0.1 54,638 - SGL_RS00250 0.66 -1.1 54,686 + SGL_RS00250 0.72 -0.1 54,859 + +0.2 54,859 + +0.1 54,868 + -0.5 54,888 - +0.3 54,905 + +0.1 54,929 + +0.0 54,956 + +0.6 54,966 + -0.6 54,966 + +0.7 54,966 + -0.6 54,974 - -0.2 55,129 + SGL_RS00255 0.16 +2.5 55,225 - SGL_RS00255 0.23 +2.5 55,241 + SGL_RS00255 0.24 +2.5 55,249 - SGL_RS00255 0.25 +2.6 55,359 + SGL_RS00255 0.33 +2.7 55,414 + SGL_RS00255 0.37 +2.3 55,414 + SGL_RS00255 0.37 +2.5 55,432 - SGL_RS00255 0.38 +2.6 55,544 + SGL_RS00255 0.46 +2.4 55,558 + SGL_RS00255 0.47 +2.5 55,691 + SGL_RS00255 0.57 +2.7 55,721 + SGL_RS00255 0.59 +2.5 55,732 + SGL_RS00255 0.60 +2.7 55,795 + SGL_RS00255 0.64 +2.8 55,835 + SGL_RS00255 0.67 +2.3 55,843 - SGL_RS00255 0.68 +2.1 55,843 - SGL_RS00255 0.68 +2.8 55,845 + SGL_RS00255 0.68 +2.3 55,845 + SGL_RS00255 0.68 +2.1 55,853 - SGL_RS00255 0.69 +2.7 55,853 - SGL_RS00255 0.69 +2.8 56,090 - SGL_RS00255 0.86 +2.6 56,149 - +2.4 56,161 + +2.2 56,161 + +2.3 56,379 + +0.6 56,387 - SGL_RS19680 0.11 -0.0 56,557 + SGL_RS19680 0.77 +0.1 56,576 - SGL_RS19680 0.84 +0.1 56,645 + -0.4 56,653 - -0.0 56,775 + +0.1 56,804 - -0.2 57,000 - SGL_RS00260 0.15 +0.7 57,046 - SGL_RS00260 0.20 -0.3 57,058 + SGL_RS00260 0.21 -0.1 57,125 + SGL_RS00260 0.28 -0.2 57,236 + SGL_RS00260 0.40 -0.9
Or see this region's nucleotide sequence