Experiment: Copper (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15830 and SGL_RS15835 are separated by 332 nucleotides SGL_RS15835 and SGL_RS15840 are separated by 168 nucleotides
SGL_RS15830: SGL_RS15830 - YihY/virulence factor BrkB family protein, at 3,000,786 to 3,001,742
_RS15830
SGL_RS15835: SGL_RS15835 - TrmJ/YjtD family RNA methyltransferase, at 3,002,075 to 3,002,797
_RS15835
SGL_RS15840: SGL_RS15840 - class A beta-lactamase, at 3,002,966 to 3,004,453
_RS15840
Position (kb)
3002
3003 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 3001.930 kb on + strand at 3001.930 kb on + strand at 3002.186 kb on + strand, within SGL_RS15835 at 3002.227 kb on + strand, within SGL_RS15835 at 3002.289 kb on + strand, within SGL_RS15835 at 3002.297 kb on - strand, within SGL_RS15835 at 3002.370 kb on - strand, within SGL_RS15835 at 3002.407 kb on - strand, within SGL_RS15835 at 3002.407 kb on - strand, within SGL_RS15835 at 3002.422 kb on - strand, within SGL_RS15835 at 3002.445 kb on + strand, within SGL_RS15835 at 3002.451 kb on - strand, within SGL_RS15835 at 3002.462 kb on - strand, within SGL_RS15835 at 3002.499 kb on + strand, within SGL_RS15835 at 3002.571 kb on - strand, within SGL_RS15835 at 3002.587 kb on - strand, within SGL_RS15835 at 3002.613 kb on - strand, within SGL_RS15835 at 3002.619 kb on - strand, within SGL_RS15835 at 3002.630 kb on + strand, within SGL_RS15835 at 3002.735 kb on - strand at 3002.830 kb on + strand at 3002.869 kb on - strand at 3002.936 kb on + strand at 3002.942 kb on + strand at 3002.996 kb on - strand at 3003.153 kb on - strand, within SGL_RS15840 at 3003.237 kb on - strand, within SGL_RS15840 at 3003.374 kb on + strand, within SGL_RS15840 at 3003.374 kb on + strand, within SGL_RS15840 at 3003.376 kb on + strand, within SGL_RS15840 at 3003.382 kb on - strand, within SGL_RS15840 at 3003.382 kb on - strand, within SGL_RS15840 at 3003.382 kb on - strand, within SGL_RS15840 at 3003.425 kb on - strand, within SGL_RS15840 at 3003.566 kb on - strand, within SGL_RS15840 at 3003.628 kb on - strand, within SGL_RS15840 at 3003.639 kb on - strand, within SGL_RS15840 at 3003.682 kb on - strand, within SGL_RS15840
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 3 uM remove 3,001,930 + -0.7 3,001,930 + -0.2 3,002,186 + SGL_RS15835 0.15 +0.5 3,002,227 + SGL_RS15835 0.21 +0.8 3,002,289 + SGL_RS15835 0.30 +0.6 3,002,297 - SGL_RS15835 0.31 +0.4 3,002,370 - SGL_RS15835 0.41 +1.4 3,002,407 - SGL_RS15835 0.46 +0.6 3,002,407 - SGL_RS15835 0.46 +0.7 3,002,422 - SGL_RS15835 0.48 +0.5 3,002,445 + SGL_RS15835 0.51 +0.7 3,002,451 - SGL_RS15835 0.52 +0.7 3,002,462 - SGL_RS15835 0.54 +0.6 3,002,499 + SGL_RS15835 0.59 +1.1 3,002,571 - SGL_RS15835 0.69 +0.2 3,002,587 - SGL_RS15835 0.71 +0.4 3,002,613 - SGL_RS15835 0.74 -0.3 3,002,619 - SGL_RS15835 0.75 +0.3 3,002,630 + SGL_RS15835 0.77 +0.6 3,002,735 - +1.6 3,002,830 + -2.4 3,002,869 - -2.1 3,002,936 + -4.5 3,002,942 + -4.3 3,002,996 - -5.1 3,003,153 - SGL_RS15840 0.13 -6.6 3,003,237 - SGL_RS15840 0.18 -5.5 3,003,374 + SGL_RS15840 0.27 -6.0 3,003,374 + SGL_RS15840 0.27 -6.2 3,003,376 + SGL_RS15840 0.28 -7.1 3,003,382 - SGL_RS15840 0.28 -5.9 3,003,382 - SGL_RS15840 0.28 -5.3 3,003,382 - SGL_RS15840 0.28 -4.7 3,003,425 - SGL_RS15840 0.31 -6.0 3,003,566 - SGL_RS15840 0.40 -6.3 3,003,628 - SGL_RS15840 0.44 -5.3 3,003,639 - SGL_RS15840 0.45 -5.1 3,003,682 - SGL_RS15840 0.48 -6.3
Or see this region's nucleotide sequence