Experiment: Copper (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13965 and SGL_RS19035 overlap by 50 nucleotides SGL_RS19035 and SGL_RS13970 are separated by 15 nucleotides SGL_RS13970 and SGL_RS13975 are separated by 220 nucleotides
SGL_RS13965: SGL_RS13965 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 2,594,055 to 2,595,161
_RS13965
SGL_RS19035: SGL_RS19035 - DUF2256 domain-containing protein, at 2,595,112 to 2,595,264
_RS19035
SGL_RS13970: SGL_RS13970 - pitrilysin family protein, at 2,595,280 to 2,596,566
_RS13970
SGL_RS13975: SGL_RS13975 - Mrp/NBP35 family ATP-binding protein, at 2,596,787 to 2,597,848
_RS13975
Position (kb)
2595
2596
2597 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2594.431 kb on + strand, within SGL_RS13965 at 2594.561 kb on - strand, within SGL_RS13965 at 2594.644 kb on - strand, within SGL_RS13965 at 2594.945 kb on + strand, within SGL_RS13965 at 2595.101 kb on + strand at 2595.121 kb on + strand at 2595.157 kb on - strand at 2595.299 kb on + strand at 2595.386 kb on + strand at 2595.391 kb on + strand at 2595.391 kb on + strand at 2595.394 kb on - strand at 2595.399 kb on - strand at 2595.426 kb on + strand, within SGL_RS13970 at 2595.619 kb on - strand, within SGL_RS13970 at 2595.625 kb on - strand, within SGL_RS13970 at 2595.630 kb on - strand, within SGL_RS13970 at 2595.773 kb on - strand, within SGL_RS13970 at 2595.863 kb on + strand, within SGL_RS13970 at 2595.863 kb on + strand, within SGL_RS13970 at 2595.863 kb on + strand, within SGL_RS13970 at 2595.933 kb on + strand, within SGL_RS13970 at 2596.060 kb on - strand, within SGL_RS13970 at 2596.248 kb on - strand, within SGL_RS13970 at 2596.281 kb on + strand, within SGL_RS13970 at 2596.294 kb on - strand, within SGL_RS13970 at 2596.481 kb on - strand at 2596.616 kb on + strand at 2596.618 kb on + strand at 2596.626 kb on - strand at 2596.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 3 uM remove 2,594,431 + SGL_RS13965 0.34 -0.9 2,594,561 - SGL_RS13965 0.46 -3.1 2,594,644 - SGL_RS13965 0.53 -0.7 2,594,945 + SGL_RS13965 0.80 -2.7 2,595,101 + -3.1 2,595,121 + -0.3 2,595,157 - -0.5 2,595,299 + +0.0 2,595,386 + +0.3 2,595,391 + -0.1 2,595,391 + +0.6 2,595,394 - +0.3 2,595,399 - +0.5 2,595,426 + SGL_RS13970 0.11 +0.1 2,595,619 - SGL_RS13970 0.26 +0.4 2,595,625 - SGL_RS13970 0.27 +0.2 2,595,630 - SGL_RS13970 0.27 +0.1 2,595,773 - SGL_RS13970 0.38 +1.1 2,595,863 + SGL_RS13970 0.45 +0.3 2,595,863 + SGL_RS13970 0.45 +0.6 2,595,863 + SGL_RS13970 0.45 +0.7 2,595,933 + SGL_RS13970 0.51 +0.2 2,596,060 - SGL_RS13970 0.61 +0.4 2,596,248 - SGL_RS13970 0.75 +0.7 2,596,281 + SGL_RS13970 0.78 +0.3 2,596,294 - SGL_RS13970 0.79 +0.3 2,596,481 - +0.6 2,596,616 + +0.3 2,596,618 + -0.2 2,596,626 - +0.1 2,596,631 - +0.5
Or see this region's nucleotide sequence