Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11030

Experiment: Copper (II) sulfate 3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11025 and SGL_RS11030 are separated by 16 nucleotidesSGL_RS11030 and SGL_RS11035 are separated by 76 nucleotides SGL_RS11025: SGL_RS11025 - oxidoreductase, at 1,935,912 to 1,937,069 _RS11025 SGL_RS11030: SGL_RS11030 - DUF433 domain-containing protein, at 1,937,086 to 1,937,397 _RS11030 SGL_RS11035: SGL_RS11035 - LapA family protein, at 1,937,474 to 1,938,310 _RS11035 Position (kb) 1937 1938Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1936.124 kb on - strand, within SGL_RS11025at 1936.232 kb on - strand, within SGL_RS11025at 1936.362 kb on + strand, within SGL_RS11025at 1936.362 kb on + strand, within SGL_RS11025at 1936.370 kb on - strand, within SGL_RS11025at 1936.370 kb on - strand, within SGL_RS11025at 1936.370 kb on - strand, within SGL_RS11025at 1936.621 kb on - strand, within SGL_RS11025at 1936.655 kb on - strand, within SGL_RS11025at 1936.725 kb on - strand, within SGL_RS11025at 1936.815 kb on + strand, within SGL_RS11025at 1937.474 kb on + strandat 1937.641 kb on + strand, within SGL_RS11035at 1937.902 kb on - strand, within SGL_RS11035at 1937.978 kb on + strand, within SGL_RS11035

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Per-strain Table

Position Strand Gene LocusTag Fraction Copper (II) sulfate 3 uM
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1,936,124 - SGL_RS11025 0.18 -1.4
1,936,232 - SGL_RS11025 0.28 -1.8
1,936,362 + SGL_RS11025 0.39 -1.1
1,936,362 + SGL_RS11025 0.39 +0.4
1,936,370 - SGL_RS11025 0.40 -2.3
1,936,370 - SGL_RS11025 0.40 -1.2
1,936,370 - SGL_RS11025 0.40 +0.0
1,936,621 - SGL_RS11025 0.61 -2.3
1,936,655 - SGL_RS11025 0.64 +1.8
1,936,725 - SGL_RS11025 0.70 -1.5
1,936,815 + SGL_RS11025 0.78 -2.8
1,937,474 + -0.0
1,937,641 + SGL_RS11035 0.20 -4.4
1,937,902 - SGL_RS11035 0.51 -5.2
1,937,978 + SGL_RS11035 0.60 -0.4

Or see this region's nucleotide sequence