Experiment: Copper (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09490 and SGL_RS19865 are separated by 69 nucleotides SGL_RS19865 and SGL_RS18860 overlap by 91 nucleotides SGL_RS18860 and SGL_RS09505 overlap by 32 nucleotides SGL_RS09505 and SGL_RS09510 are separated by 26 nucleotides
SGL_RS09490: SGL_RS09490 - CBS domain-containing protein, at 1,625,622 to 1,626,095
_RS09490
SGL_RS19865: SGL_RS19865 - IS630 transposase-related protein, at 1,626,165 to 1,626,524
_RS19865
SGL_RS18860: SGL_RS18860 - IS630 family transposase, at 1,626,434 to 1,627,012
_RS18860
SGL_RS09505: SGL_RS09505 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 1,626,981 to 1,628,018
_RS09505
SGL_RS09510: SGL_RS09510 - beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase, at 1,628,045 to 1,629,607
_RS09510
Position (kb) 1626
1627
1628
1629 Strain fitness (log2 ratio) -1
0
1 at 1626.001 kb on - strand, within SGL_RS09490 at 1626.001 kb on - strand, within SGL_RS09490 at 1627.100 kb on + strand, within SGL_RS09505 at 1627.108 kb on - strand, within SGL_RS09505 at 1627.126 kb on - strand, within SGL_RS09505 at 1627.175 kb on + strand, within SGL_RS09505 at 1628.372 kb on - strand, within SGL_RS09510
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 3 uM remove 1,626,001 - SGL_RS09490 0.80 +0.5 1,626,001 - SGL_RS09490 0.80 +0.2 1,627,100 + SGL_RS09505 0.11 -0.3 1,627,108 - SGL_RS09505 0.12 +0.8 1,627,126 - SGL_RS09505 0.14 +0.0 1,627,175 + SGL_RS09505 0.19 -0.1 1,628,372 - SGL_RS09510 0.21 -0.5
Or see this region's nucleotide sequence